<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24160

Description Uncharacterized protein
SequencePTVVGLALGGSKSSAYVLQWALANFARDDAAPPAFKLIHVLTPVLAVPTPMGGRLPIDEVKSTVADDYLGKKWIKKQQMLFRCKDTCDENKVEAQVLLVEGNDVADTISSLVSQYKIQILVVGNSSSMIPFTSRMSSVTRTSSKICKSVPSFCTAYVVSKDGLSSVYASESESGLPSGSLVPKGNSESSETEEFIDSSISDLDDSSGRGLSGFPSLPRSNLASENLESISSVEGFNLYDYLTGNASVYANKDRRITPCTGAQSSISSQFQGSDKVPTKESSLLGFMLSDKKGSDKVPTKQNSLLELMLSEKKVSGNKDDISTELEKLKLELGHIQGAYKLVQDESVDASHQVNELAARRMEVEAQLSEIQARVDKANDDVQEQMAQRLLAEEAATQLKDLVRAEVMQKNRLLAKASKDADRKARLEKLLVLQGDSYSTFTWEEIDNATASFSESLKIGTGSNGTVYKGHLNHLDVAIKVLHSNDSTSTKHFNQELEVLSRIRHPHLLMLLGACPDKGCLVYEYMENGSLADRLQRRKGTPAIPWVDRFRIAWEIASALVFLHSTKPSPIIHRDLKPENVLLDSNLVSKIGDVGLSTLMPQKETLSNRTVYKRTGLAGTLFYLDPEYQRSGQVSVKSDTYALGMVILELLTAKSPIGLPELVERAVEDGQITDVLDKSAGDWPVKEAHELAQLGLKCLEMRSKDRPDLKSVVAVDLERLKHSTAVPGLAGPPSHFMCPILKKVMKNPCLAADGYSYEHDAIVMWLCDQNTSPVTKAQLRDKKLVPNLSLMSAIASWMAQGGRPLME
Length805
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.266
Instability index36.50
Isoelectric point6.02
Molecular weight88097.49
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24160
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.19|      20|      20|     271|     290|       1
---------------------------------------------------------------------------
  271-  290 (38.45/25.25)	GSDKVPTKESSLLGFMLSDK
  292-  311 (37.74/24.64)	GSDKVPTKQNSLLELMLSEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.28|      18|      20|      85|     102|       2
---------------------------------------------------------------------------
   67-   84 (30.00/25.19)	DYLGK.....KWIKKQQMLFRCK
   85-  102 (28.81/23.84)	DTCDE.....NKVEAQVLLVEGN
  103-  124 (20.47/14.46)	DVADTisslvSQYKIQILVV.GN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.31|      20|      20|     462|     481|       3
---------------------------------------------------------------------------
  462-  481 (34.57/22.66)	NGTVYKGHLNH.LDVAIKVLH
  483-  503 (29.73/18.57)	NDSTSTKHFNQeLEVLSRIRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.35|      27|      35|     173|     204|       4
---------------------------------------------------------------------------
  173-  204 (35.09/44.44)	SGLPSgslVPKGNsESSETEEFIdSSIS..DLDD
  211-  239 (44.26/31.70)	SGFPS...LPRSN.LASENLESI.SSVEgfNLYD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.42|      24|      25|     383|     407|       5
---------------------------------------------------------------------------
  357-  383 (28.69/14.57)	ARRMEVEAQLSEIQARVdkaNDDVQEQ
  385-  408 (35.73/26.97)	AQRLLAEEAATQLKDLV...RAEVMQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.79|      33|     138|     506|     538|       6
---------------------------------------------------------------------------
  506-  538 (60.07/40.54)	LLMLLGACPDKGC..LVYEYMENGSLADRLQRRKG
  645-  679 (48.72/31.51)	ILELLTAKSPIGLpeLVERAVEDGQITDVLDKSAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.74|      10|      25|     135|     144|       7
---------------------------------------------------------------------------
  135-  144 (16.66/10.72)	MSSVTRTSSK
  163-  172 (16.08/10.08)	LSSVYASESE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24160 with Med32 domain of Kingdom Viridiplantae
Unable to open file!