<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24154

Description Uncharacterized protein
SequenceMAANEGDGTGAGAAPTVVGLALGGSKSSAYVLQWALANFARDDAAPPAFKLIHVLTPVLAVPTPMGGRLPIDEVKSTVADDYLGKKWIKKQQMLFRCKDTCDENKVEAQVLLVEGNDVADTISSLVSQYKIQILVVGNSSSMIPFTRMSSVTRTSSKICKSVPSFCTAYVVSKDGLSSVYASESESGLPSGSLVPKGNSESSETEEFIDSSISDLDDSSGRGLSGFPSLPRSNLASENLESISSVEGFNLYDYLTGNASVYANKDRRITPCTGAQSSISSQFQGSDKVPTKESSLLGFMLSDKKGSDKVPTKQNSLLELMLSEKKDDISTELEKLKLELGHIQGAYKLVQDESVDASHQVNELAARRMEVEAQLSEIQARVDKANDDVQEQMAQRLLAEEAATQLKDLVRAEVMQKNRLLAKASKDADRKARLEKLLVLQGDSYSTFTWEEIDNATASFSESLKIGTGSNGTVYKGHLNHLDVAIKVLHSNDSTSTKHFNQELEVLSRIRHPHLLMLLGACPDKGCLVYEYMENGSLADRLQRRKGTPAIPWVDRFRIAWEIASALVFLHSTKPSPIIHRDLKPENVLLDSNLVSKIGDVGLSTLMPQKETLSNRTVYKRTGLAGTLFYLDPEYQRSGQVSVKSDTYALGMVILELLTAKSPIGLPELVERAVEDGQITDVLDKSAGDWPVKEAHELAQLGLKCLEMRSKDRPDLKSVVAVDLERLKHSTAVPGLAGPPSHFMCPILKKVMKNPCLAADGYSYEHDAIVMWLCDQNTSPVTKAQLRDKKLVPNLSLMSAIASWMAQGGRP
Length810
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.263
Instability index35.99
Isoelectric point5.87
Molecular weight88325.61
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24154
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.08|      20|      20|     284|     303|       1
---------------------------------------------------------------------------
  284-  303 (39.62/28.78)	GSDKVPTKESSLLGFMLSDK
  305-  324 (36.46/25.84)	GSDKVPTKQNSLLELMLSEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.28|      18|      20|      99|     116|       2
---------------------------------------------------------------------------
   81-   98 (30.00/20.89)	DYLGK.....KWIKKQQMLFRCK
   99-  116 (28.81/19.77)	DTCDE.....NKVEAQVLLVEGN
  117-  138 (20.47/11.99)	DVADTisslvSQYKIQILVV.GN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.31|      20|      20|     470|     489|       3
---------------------------------------------------------------------------
  470-  489 (34.57/23.50)	NGTVYKGHLNH.LDVAIKVLH
  491-  511 (29.73/19.25)	NDSTSTKHFNQeLEVLSRIRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.35|      27|      35|     186|     217|       4
---------------------------------------------------------------------------
  186-  217 (35.09/34.37)	SGLPSgslVPKGNsESSETEEFIdSSIS..DLDD
  224-  252 (44.26/24.51)	SGFPS...LPRSN.LASENLESI.SSVEgfNLYD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.79|      33|     138|     514|     546|       5
---------------------------------------------------------------------------
  514-  546 (60.07/38.94)	LLMLLGACPDKGC..LVYEYMENGSLADRLQRRKG
  653-  687 (48.72/30.25)	ILELLTAKSPIGLpeLVERAVEDGQITDVLDKSAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.52|      25|      25|     391|     415|       6
---------------------------------------------------------------------------
  343-  390 (17.76/ 9.71)	QGAYKLVQD.....EsvdASHQVNELaarrmeVEAqlseiqarvdkandDVQE
  391-  415 (40.64/33.49)	QMAQRLLAE.....E...AATQLKDL......VRA..............EVMQ
  416-  440 (22.11/14.23)	K..NRLLAKaskdaD...RKARLEKL......L.................VLQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24154 with Med32 domain of Kingdom Viridiplantae
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