<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24152

Description Uncharacterized protein
SequenceGAAPTVVGLALGGSKSSAYVLQWALANFARDDAAPPAFKLIHVLTPVLAVPTPMGGRLPIDEVKSTVADDYLGKKWIKKQQMLFRCKDTCDENKVEAQVLLVEGNDVADTISSLVSQYKIQILVVGNSSSMIPFTRMSSVTRTSSKICKSVPSFCTAYVVSKDGLSSVYASESESGLPSGSLVPKGNSESSETEEFIDSSISDLDDSSGRGLSGFPSLPRSNLASENLESISSVEGFNLYDYLTGNASVYANKDRRITPCTGAQSSISSQFQGSDKVPTKESSLLGFMLSDKKGSDKVPTKQNSLLELMLSEKKVSGNKDDISTELEKLKLELGHIQGAYKLVQDESVDASHQVNELAARRMEVEAQLSEIQARVDKANDDVQEQMAQRLLAEEAATQLKDLVRAEVMQKNRLLAKASKDADRKARLEKLLVLQGDSYSTFTWEEIDNATASFSESLKIGTGSNGTVYKGHLNHLDVAIKVLHSNDSTSTKHFNQELEVLSRIRHPHLLMLLGACPDKGCLVYEYMENGSLADRLQRRKGTPAIPWVDRFRIAWEIASALVFLHSTKPSPIIHRDLKPENVLLDSNLVSKIGDVGLSTLMPQKETLSNRTVYKRTGLAGTLFYLDPEYQRSGQVSVKSDTYALGMVILELLTAKSPIGLPELVERAVEDGQITDVLDKSAGDWPVKEAHELAQLGLKCLEMRSKDRPDLKSVVAVDLERLKHSTAVPGLAGPPSHFMCPILKKVMKNPCLAADGYSYEHDAIVMWLCDQNTSPVTKAQLRDKKLVPNLSLMSAIASWMAQGGRPLME
Length807
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.260
Instability index36.33
Isoelectric point6.02
Molecular weight88209.62
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24152
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.19|      20|      20|     273|     292|       1
---------------------------------------------------------------------------
  273-  292 (38.45/23.80)	GSDKVPTKESSLLGFMLSDK
  294-  313 (37.74/23.22)	GSDKVPTKQNSLLELMLSEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.28|      18|      20|      88|     105|       2
---------------------------------------------------------------------------
   70-   87 (30.00/20.56)	DYLGK.....KWIKKQQMLFRCK
   88-  105 (28.81/19.46)	DTCDE.....NKVEAQVLLVEGN
  106-  127 (20.47/11.75)	DVADTisslvSQYKIQILVV.GN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.31|      20|      20|     464|     483|       3
---------------------------------------------------------------------------
  464-  483 (34.57/27.96)	NGTVYKGHLNH.LDVAIKVLH
  485-  505 (29.73/22.95)	NDSTSTKHFNQeLEVLSRIRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.35|      27|      35|     175|     206|       4
---------------------------------------------------------------------------
  175-  206 (35.09/40.78)	SGLPSgslVPKGNsESSETEEFIdSSIS..DLDD
  213-  241 (44.26/29.11)	SGFPS...LPRSN.LASENLESI.SSVEgfNLYD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.79|      33|     138|     508|     540|       5
---------------------------------------------------------------------------
  508-  540 (60.07/40.03)	LLMLLGACPDKGC..LVYEYMENGSLADRLQRRKG
  647-  681 (48.72/31.11)	ILELLTAKSPIGLpeLVERAVEDGQITDVLDKSAG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24152 with Med32 domain of Kingdom Viridiplantae
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