<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24141

Description Uncharacterized protein
SequenceLCFLILLFFRRQQQLAPYRLKCDREPLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSHISYFCKPDIVGKCKEALKKRLRAINESRAQKRKALAQPNKRLRLLSEHVPHGYRRKSLFDVLTRCNVPLLRATWFVKVTYLNQPQVRPTSSSISTGASDNQRSNQWTKDVVEYLQQLLDEFNLKEAHPSFKEQPSAGLISGATQVKLKHEAPSAGGDTEEPLVHFKWWYMVRLVQWHLTEELLVPSVLIEWLCYQLQERDSVEALELLLPIVLGLVETITLSQTYVRMFVEILVRRLSDASAVDNPKRSSISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVAPDVYGRGALLKITGGGEMSSSKRRDVYRYLSCGYAVCSIQRRASDLATLASPNVHARGAAKVVQALDKALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRTSPSQNVKFTGRRDLSQIHLAVSILKNKMTEMNKLSRSKSSSRIAMNNIGKGSSLNDASVAATKVGDSSGLRSNGKNEEEKKERKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELIRSGVFYPQAYVRQLIISGVTDKNGTLLDMERKRRHHRILKQLPGSSLFDILEEDVVAEEQQLHEVMSTYSSERRLVLSELSSGQSFDANNRGEYTSSSYLRIPSGTNHGGVPEQVEDVKVLVSSLLCFIYPHSAESEQNETKMNFQGSSTSTLTQVDTGEAKNGCEDCMRINGQKLDERTSPFFPLIQSDEEDVWWVRKGTELQESFKAEPALKSIKQTSRGRAKVVRKTQNLAQLATAKIEGSQGEASTSHLCESKLSCPHHKPSTDGDNGKDADHTRMTNLAEVGKSLKKLRLLERRSISVWLLKSVRQLVEGNETTACKASNSISSFSSQPDDKTVPKWRLGDEELMSILYILDTCCDLASAARFLVWLLAKIRGGMGTLGQVGRSAAHMKNRDNQVCQVGEAFVFSSLLRYENILLATDLLPEVLNASTNRNFVLGTARHPAPAAFPYTRYFLRKYRDVASVVRWEKIFRTTCDQRLLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLSGRGSRIIPNMKEIVQRQAEEIQRNLKEKKIPAAPKSPSFEKEDSFQIAHDTVLGLVECIRQNGGATPDGDPSAVASAVSAVVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHINSLCLLKEALGDRFSRVFEVALAVEASSAVTAAFAPPKVQRNQFQPSSETHDAYGNHTNEPLSTSGKGFVGRAGKVAAAISALVVGAVVHGAVSLERMIAVLKVKDGLEIQQVLRGLRPSNNGASRSAVTFKMDNSIEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQQKLPLSVVFPPAYSIFAIVRWRQYILSREDMQVYQSIANAINDITRHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLETHCSDKNVRQLFMPLRGRLFLNALVDCKTPAVIQVDGSEPGEAKENELKVLSERLVQSLDTLQPAKFHWQWVELRLLLDEQALAEKLDKAEKSKIPMPILMTLADGLRKLSPNSESFTLSESEKGFTEIILSRLVARPDAAPLYSEVVHLLGKLQESLVVDVKWILQGQDAVLGRKSTRQQLLTIATRRGVPIKAQVWKPWGWSSLLTDVMANRSAKRKLEAAPIEEGEVVDDPADAKRPSKSTPNNVDRSVEATRSNINKYVTEKAFAELMLPCIDRSSPEFRSIFAGELIKQMGTVSEHIKAISRNGAKHVGLVPSGNDVSSNKSSGRKGIRGGSPNIGRRVTVGNDPTPPSASALQAIVWLRLQFIIRLLQVILADRGMRHTLAPAILSLLAARIIYEDADSPLPPASLIASRREVDSLLEPPMDVLLDRPSESLFERLLCVFHALLGNCKPSWMKSKPVSKPTVRASRDIPAFDNEAAVALQSALDHMELPGAIRRRIQAAMPILPPARHPSIQCQPSQLSLAALSPLQSTPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPSTSSGSNSASGIAPDHSNLKACSWLKGAVRVRRAELTYIGSLDDDS
Length2139
PositionKinase
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.250
Instability index50.05
Isoelectric point8.61
Molecular weight237015.28
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24141
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.87|      18|      20|      90|     109|       1
---------------------------------------------------------------------------
   92-  109 (29.47/25.16)	KKRLRAINE..SRAQKRKAL
  113-  132 (27.40/14.53)	NKRLRLLSEhvPHGYRRKSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.36|      14|      49|     352|     365|       2
---------------------------------------------------------------------------
  352-  365 (26.54/18.10)	LPSFVAPDVYGRGA
  403-  416 (22.81/14.32)	LATLASPNVHARGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.75|      21|      23|     240|     262|       3
---------------------------------------------------------------------------
  232-  252 (41.85/20.82)	TEEPLVH..FKWWYMVRLVQWHL
  253-  275 (33.90/20.74)	TEELLVPsvLIEWLCYQLQERDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     334.59|      88|     589|    1064|    1171|       4
---------------------------------------------------------------------------
  972- 1029 (48.12/26.54)	.....ILDTCCDlasaARflvwLLAKIRGGMGTLGQVGRSAAHMKNR..DNQVCQ...........................................................vgeafvfsSL
 1030- 1083 (35.97/49.52)	LRYENILLAT.D..........LLPEVLNA.STNRNFVLGTA..........................................................rhpapaafpytryflrkyrdvaSV
 1084- 1171 (136.07/92.20)	VRWEKIFRTTCD....QR....LLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLSGRGSRIIPNM.KEIVQRQAEEIQrnLKEKKI...PAAPKSPS........................
 1670- 1749 (114.43/69.98)	VKW..ILQGQ.D....AV....L......GRKSTRQQLLTIATRRGVPIKAQV.WKPWGWSSLLTDVMaNRSAKRKLEAAP..IEEGEVvddPADAKRPS........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.34|      15|      18|    1900|    1917|       5
---------------------------------------------------------------------------
 1900- 1917 (22.40/22.34)	SLLAARiiyEDADSPLPP
 1919- 1933 (25.94/15.43)	SLIASR...REVDSLLEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.98|      15|     585|    1392|    1406|       7
---------------------------------------------------------------------------
 1392- 1406 (30.46/22.32)	EVLVHWFRILLGNCR
 1948- 1962 (29.52/21.35)	ERLLCVFHALLGNCK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.87|      18|      18|      40|      57|       8
---------------------------------------------------------------------------
   22-   37 (17.57/ 8.64)	...CDREPLNNKLGPP..DfY
   40-   57 (33.48/25.04)	TPNCPEETLTKEYVQS..G.Y
   60-   77 (19.82/10.97)	TVEGIEEA..REIVLShiS.Y
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.54|      12|     589|    1427|    1441|       9
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 1427- 1441 (18.61/17.91)	RLQQKLPlsvVFPPA
 2009- 2020 (22.92/12.78)	RIQAAMP...ILPPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.42|      32|      52|     820|     852|      10
---------------------------------------------------------------------------
  793-  818 (39.51/18.11)	LDE..RTSPFFPLI.QSDEED.VWWVRKGT...
  820-  851 (50.95/26.54)	LQESFKAEPALKSIKQTSRGR.AKVVRKTQNLA
  870-  901 (50.97/23.01)	LCESKLSCPHHKPSTDGDNGKdADHTRMT.NLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.34|      28|     881|     286|     335|      11
---------------------------------------------------------------------------
  286-  330 (32.92/54.31)	VLGLVETItlsqtyvrmfveilvRRLSDASAVDNPkrSSISS...........VIA
 1185- 1223 (42.42/19.61)	VLGLVECI...............RQNGGATPDGDP..SAVASavsavvvnaghVIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.96|      10|      18|     372|     381|      14
---------------------------------------------------------------------------
  372-  381 (17.95/ 9.29)	GGEMSSSKRR
  390-  399 (19.01/10.27)	GYAVCSIQRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.11|      10|      18|     501|     510|      15
---------------------------------------------------------------------------
  501-  510 (17.61/13.00)	KFTGRRDLSQ
  521-  530 (17.50/12.86)	KMTEMNKLSR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24141 with Med12 domain of Kingdom Viridiplantae
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