<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24139

Description Uncharacterized protein
SequenceAPYRLKCDREPLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSHISYFCKPDIVGKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRPCNEDSRRKWAEALAQPNKRLRLLSEHVPHGYRRKSLFDVLTRCNVPLLRATWFVKVTYLNQPQVRPTSSSISTGASDNQRSNQWTKDVVEYLQQLLDEFNLKEAHPSFKEQPSAGLISGATQVKLKHEAPSAGGDTEEPLVHFKWWYMVRLVQWHLTEELLVPSVLIEWLCYQLQERDSVEALELLLPIVLGLVETITLSQTYVRMFVEILVRRLSDASAVDNPKRSSISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVAPDVYGRGALLKITGGGEMSSSKRRDVYRYLSCGYAVCSIQRRASDLATLASPNVHARGAAKVVQALDKALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRTSPSQNVKFTGRRDLSQIHLAVSILKNKMTEMNKLSRSKSSSRIAMNNIGKGSSLNDASVAATKVGDSSGLRSNGKNEEEKKERKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELIRSGVFYPQAYVRQLIISGVTDKNGTLLDMERKRRHHRILKQLPGSSLFDILEEDVVAEEQQLHEVMSTYSSERRLVLSELSSGQSFDANNRGEYTSSSYLRIPSGTNHGGVPEQVEDVKVLVSSLLCFIYPHSAESEQNETKMNFQGSSTSTLTQVDTGEAKNGCEDCMRINGQKLDERTSPFFPLIQSDEEDVWWVRKGTELQESFKAEPALKSIKQTSRGRAKVVRKTQNLAQLATAKIEGSQGEASTSHLCESKLSCPHHKPSTDGDNGKDADHTRMTNLAEVGKSLKKLRLLERRSISVWLLKSVRQLVEGNETTACKASNSISSFSSQPDDKTVPKWRLGDEELMSILYILDTCCDLASAARFLVWLLAKIRGGMGTLGQVGRSAAHMKNRDNQVCQVGEAFVFSSLLRYENILLATDLLPEVLNASTNRNFVLGTARHPAPAAFPYTRYFLRKYRDVASVVRWEKIFRTTCDQRLLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLSGRGSRIIPNMKEIVQRQAEEIQRNLKEKKIPAAPKSPSFEKEDSFQIAHDTVLGLVECIRQNGGATPDGDPSAVASAVSAVVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHINSLCLLKEALGDRFSRVFEVALAVEASSAVTAAFAPPKVQRNQFQPSSETHDAYGNHTNEPLSTSGKGFVGRAGKVAAAISALVVGAVVHGAVSLERMIAVLKVKDGLEIQQVLRGLRPSNNGASRSAVTFKMDNSIEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQQKLPLSVVFPPAYSIFAIVRWRQYILSREDMQVYQSIANAINDITRHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLETHCSDKNVRQLFMPLRGRLFLNALVDCKTPAVIQVDGSEPGEAKENELKVLSERLVQSLDTLQPAKFHWQWVELRLLLDEQALAEKLDKAEKSKIPMPILMTLADGLRKLSPNSESFTLSESEKGFTEIILSRLVARPDAAPLYSEVVHLLGKLQESLVVDVKWILQGQDAVLGRKSTRQQLLTIATRRGVPIKAQVWKPWGWSSLLTDVMANRSAKRKLEAAPIEEGEVVDDPADAKRPSKSTPNNVDRSVEATRSNINKYVTEKAFAELMLPCIDRSSPEFRSIFAGELIKQMGTVSEHIKAISRNGAKHVGLVPSGNDVSSNKSSGRKGIRGGSPNIGRRVTVGNDPTPPSASALQAIVWLRLQFIIRLLQVILADRGMRHTLAPAILSLLAARIIYEDADSPLPPASLIASRREVDSLLEPPMDVLLDRPSESLFERLLCVFHALLGNCKPSWMKSKPVSKPTVRASRDIPAFDNEAAVALQSALDHMELPGAIRRRIQAAMPILPPARHPSIQCQPSQLSLAALSPLQSTPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPSTSSGSNSASGIAPDHSNLKACSWLKGAVRVRRAELTYIGSLDDDS
Length2160
PositionKinase
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.266
Instability index49.66
Isoelectric point8.57
Molecular weight239078.38
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24139
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     506.37|     165|     619|    1119|    1291|       1
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 1119- 1291 (258.50/151.65)	LLADLDNGRSIDGDfVSSSGVLGGEEIDDQVRQKLSGRGS.....RIIPNMKEIVQRQAEEiqRNLKEKKIPAAPK.SPSFEKEDSFQIAH..DTVLGLVECIRQNG....GATPDG.DPSAVASAVSAVVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHinslcLLKEALGDRFSR
 1735- 1912 (247.87/128.86)	LLTDVMANRSAKRK.LEAAPIEEGEVVDDPADAKRPSKSTpnnvdRSVEATRSNINKYVTE..KAFAELMLPCIDRsSPEFRSIFAGELIKqmGTVSEHIKAISRNGakhvGLVPSGnDVSSNKSSGRKGIRGGSPNIGRRVTVGNDPTPPSASALQAIVWLRLQFIIR.....LLQVILADRGMR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     227.08|      69|     617|     329|     401|       2
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  329-  401 (113.79/79.71)	VRRLSDASAVDNPKRS.SISSviaeLLRYMVLAVPDTFVSLD.............................CFPLPSFVAPDVYGRGA......LLK..ITGG.GEMSSSKR
  404-  458 (52.39/27.47)	.........................VYRYLSCGYAVCSIQRR.............................ASDLATLASPNVHARGAakvvqaLDKalVTGN.LTMAYS..
  947- 1026 (60.90/34.52)	VRQLVEGNETTACKASnSISS.....................fssqpddktvpkwrlgdeelmsilyildtCCDLASAARFLVW...L......LAK..IRGGmGTLGQVGR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.09|      31|      51|    2037|    2068|       3
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 2037- 2068 (51.77/33.08)	ILPPaRHPSIQCQP.SQLSLAALSPLQSTPSTS
 2091- 2122 (52.32/29.28)	VLPP.QDPEMEVDPwTLLEDGTSCPSTSSGSNS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.75|      21|      23|     261|     283|       4
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  253-  273 (41.85/23.98)	TEEPLVH..FKWWYMVRLVQWHL
  274-  296 (33.90/23.89)	TEELLVPsvLIEWLCYQLQERDS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.34|      15|      18|    1921|    1938|       5
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 1921- 1938 (22.40/21.83)	SLLAARiiyEDADSPLPP
 1940- 1954 (25.94/15.15)	SLIASR...REVDSLLEP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     395.03|     129|     655|      30|     252|       6
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  106-  242 (204.43/204.50)	LIKPGV.YPE...QRPCNEDSRRKWAEALAQPNKR..LRLLsEHVPhGyrrKSLFDVLTRCNVPLLRATWFVKVTYLNQPQVRPTSS.....SISTGAS.D.NQRSNQWTK..DVVEYLQQLLDEFNLKEAHPSFkEQPsaGLISGATQVKL
  542-  616 (71.74/12.72)	........................................................................KMTEMNKLSRSKSSSriamnNIGKGSS.L.NDASVAATKvgDSSGLRSNGKNEEEKKERKDIF.ESP..GPLHDIIVCWL
  637-  739 (118.86/64.24)	LIRSGVfYPQayvRQLIISGVTDKNGTLLDMERKRrhHRIL.KQLP.G...SSLFDILEEDVVAEEQQLHEVMSTY..SSERRLVLS.....ELSSGQSfDaNNRGE.YTS..S..SYLR................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.36|      15|      23|    1437|    1457|       8
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 1437- 1451 (24.04/26.71)	ILGESY.VLALSRLQQ
 1458- 1473 (24.32/ 9.42)	VFPPAYsIFAIVRWRQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.29|      15|      23|     847|     862|       9
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  847-  862 (20.81/22.37)	AEPALKSIkQTSRGRA
  872-  886 (24.49/19.57)	AQLATAKI.EGSQGEA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.58|      35|     310|    1331|    1365|      10
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 1331- 1365 (59.01/41.48)	NHTNEPLSTSGKGF..VGRAGKVAAAISALVVGAVVH
 1642- 1678 (54.57/37.72)	NSESFTLSESEKGFteIILSRLVARPDAAPLYSEVVH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.07|      11|      16|    1073|    1084|      11
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 1073- 1084 (16.66/15.03)	RNFvLGTARHPA
 1092- 1102 (18.40/10.95)	RYF.LRKYRDVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.39|      55|     421|    1534|    1597|      13
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 1534- 1597 (71.71/67.13)	DKNVRQLFMPLRGrLFLNALVDCKtPAVIQvdgSEPgEAKENelkVLSERLVQSLD.....TLQPAKFH
 1961- 2020 (93.68/55.15)	DRPSESLFERLLC.VFHALLGNCK.PSWMK...SKP.VSKPT...VRASRDIPAFDneaavALQSALDH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.33|      19|      25|    1475|    1493|      14
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 1475- 1493 (32.15/20.32)	ILSREDMQVYQSIANAIND
 1503- 1521 (34.18/22.05)	ICFRNTHQLYDLLAADVGD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.14|      13|      24|     804|     816|      16
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  804-  816 (24.34/17.89)	EDCMRI.NGQKLDE
  830-  843 (20.80/13.99)	EDVWWVrKGTELQE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24139 with Med12 domain of Kingdom Viridiplantae
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