<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24132

Description Uncharacterized protein
SequenceFFRRQQQLAPYRLKCDREPLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSHISYFCKPDIVGKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRPCNEDSRRKWAEALAQPNKRLRLLSEHVPHGYRRKSLFDVLTRCNVPLLRATWFVKVTYLNQVRPTSSSISTGASDNQRSNQWTKDVVEYLQQLLDEFNLKEAHPSFKEQPSAGLISGATQVKLKHEAPSAGGDTEEPLVHFKWWYMVRLVQWHLTEELLVPSVLIEWLCYQLQERDSVEALELLLPIVLGLVETITLSQTYVRMFVEILVRRLSDASAVDNPKRSSISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVAPDVYGRGALLKITGGGEMSSSKRRDVYRYLSCGYAVCSIQRRASDLATLASPNVHARGAAKVVQALDKALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRTSPSQNVKFTGRRDLSQIHLAVSILKNKMTEMNKLSRSKSSSRIAMNNIGKGSSLNDASVAATKVGDSSGLRSNGKNEEEKKERKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELIRSGVFYPQAYVRQLIISGVTDKNGTLLDMERKRRHHRILKQLPGSSLFDILEEDVVAEEQQLHEVMSTYSSERRLVLSELSSGQSFDANNRGEYTSSSYLRIPSGTNHGGVPEQVEDVKVLVSSLLCFIYPHSAESEQNETKMNFQGSSTSTLTQVDTGEAKNGCEDCMRINGQKLDERTSPFFPLIQSDEEDVWWVRKGTELQESFKAEPALKSIKQTSRGRAKVVRKTQNLAQLATAKIEGSQGEASTSHLCESKLSCPHHKPSTDGDNGKDADHTRMTNLAEVGKSLKKLRLLERRSISVWLLKSVRQLVEGNETTACKASNSISSFSSQPDDKTVPKWRLGDEELMSILYILDTCCDLASAARFLVWLLAKIRGGMGTLGQVGRSAAHMKNRDNQVCQVGEAFVFSSLLRYENILLATDLLPEVLNASTNRNFVLGTARHPAPAAFPYTRYFLRKYRDVASVVRWEKIFRTTCDQRLLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLSGRGSRIIPNMKEIVQRQAEEIQRNLKEKKIPAAPKSPSFEKEDSFQIAHDTVLGLVECIRQNGGATPDGDPSAVASAVSAVVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHINSLCLLKEALGDRFSRVFEVALAVEASSAVTAAFAPPKVQRNQFQPSSETHDAYGNHTNEPLSTSGKGFVGRAGKVAAAISALVVGAVVHGAVSLERMIAVLKVKDGLEIQQVLRGLRPSNNGASRSAVTFKMDNSIEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQQKLPLSVVFPPAYSIFAIVRWRQYILSREDMQVYQSIANAINDITRHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLETHCSDKNVRQLFMPLRGRLFLNALVDCKTPAVIQVDGSEPGEAKENELKVLSERLVQSLDTLQPAKFHWQWVELRLLLDEQALAEKLDKAEKSKIPMPILMTLADGLRKLSPNSESFTLSESEKGFTEIILSRLVARPDAAPLYSEVVHLLGKLQESLVVDVKWILQGQDAVLGRKSTRQQLLTIATRRGVPIKAQVWKPWGWSSLLTDVMANRSAKRKLEAAPIEEGEVVDDPADAKRPSKSTPNNVDRSVEATRSNINKYVTEKAFAELMLPCIDRSSPEFRSIFAGELIKQMGTVSEHIKAISRNGAKHVGLVPSGNDVSSNKSSGRKGIRGGSPNIGRRVTVGNDPTPPSASALQAIVWLRLQFIIRLLQVILADRGMRHTLAPAILSLLAARIIYEDADSPLPPASLIASRREVDSLLEPPMDVLLDRPSESLFERLLCVFHALLGNCKPSWMKSKPVSKPTVRASRDIPAFDNEAAVALQSALDHMELPGAIRRRIQAAMPILPPARHPSIQCQPSQLSLAALSPLQSTPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPSTSSGSNSASGIAPDHSNLKACSWLKGAVRVRRAELTYIGSLDDDS
Length2166
PositionKinase
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.268
Instability index49.90
Isoelectric point8.63
Molecular weight239957.40
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24132
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     504.76|     164|     617|    1125|    1297|       1
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 1125- 1297 (259.50/213.27)	LLADLDNGRSIDGDfVSSSGVLGGEEIDDQVRQKlsgRGSRIIP.NMKEIVQRQAEEIQRNLKEKK.....IPAAPK.SPSFEKEDSFQIAHD..TVLGLVECIRQNG....GATPDG.DPSAVASAVSAVVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHinslcLLKEALGDRFSR
 1741- 1918 (245.26/177.12)	LLTDVMANRSAKRK.LEAAPIEEGEVVDDPADAK...RPSKSTPnNVDRSVEATRSNINKYVTEKAfaelmLPCIDRsSPEFRSIFAGELIKQmgTVSEHIKAISRNGakhvGLVPSGnDVSSNKSSGRKGIRGGSPNIGRRVTVGNDPTPPSASALQAIVWLRLQFIIR.....LLQVILADRGMR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     227.08|      69|     617|     335|     407|       2
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  335-  407 (113.79/85.89)	VRRLSDASAVDNPKRS.SISSviaeLLRYMVLAVPDTFVSLD.............................CFPLPSFVAPDVYGRGA......LLK..ITGG.GEMSSSKR
  410-  464 (52.39/29.65)	.........................VYRYLSCGYAVCSIQRR.............................ASDLATLASPNVHARGAakvvqaLDKalVTGN.LTMAYS..
  953- 1032 (60.90/37.25)	VRQLVEGNETTACKASnSISS.....................fssqpddktvpkwrlgdeelmsilyildtCCDLASAARFLVW...L......LAK..IRGGmGTLGQVGR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.09|      31|      51|    2043|    2074|       3
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 2043- 2074 (51.77/31.87)	ILPPaRHPSIQCQP.SQLSLAALSPLQSTPSTS
 2097- 2128 (52.32/28.21)	VLPP.QDPEMEVDPwTLLEDGTSCPSTSSGSNS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.75|      21|      23|     267|     289|       4
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  259-  279 (41.85/22.27)	TEEPLVH..FKWWYMVRLVQWHL
  280-  302 (33.90/22.18)	TEELLVPsvLIEWLCYQLQERDS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.54|      15|      18|    1927|    1944|       5
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 1927- 1944 (22.52/23.71)	SLLAARiiyEDADSPLPP
 1946- 1960 (26.01/16.38)	SLIASR...REVDSLLEP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.36|      15|      23|    1443|    1463|       7
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 1443- 1457 (24.04/24.34)	ILGESY.VLALSRLQQ
 1464- 1479 (24.32/ 8.42)	VFPPAYsIFAIVRWRQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.29|      15|      23|     853|     868|       8
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  853-  868 (20.81/17.72)	AEPALKSIkQTSRGRA
  878-  892 (24.49/15.48)	AQLATAKI.EGSQGEA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.54|      36|     617|     704|     755|      11
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  179-  216 (58.31/29.59)	VKVTYLNQVRPTSSSISTGAS.DNQRSNQWTKDvvEYLQ
  709-  745 (56.23/52.39)	VMSTYSSERRLVLSELSSGQSfDANNRGEYTSS..SYLR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24132 with Med12 domain of Kingdom Viridiplantae
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