<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24120

Description Uncharacterized protein
SequenceIGRVFSADVKLFLEVFNPCSPRNLNREYLLVFLKFYDPEQTQLRYIGTLFVSCSSRPLDILPKLRSLAGFCADEEIELYEEIKFEPNVMCEALDIHHTFTVNQIENGDIICFQKRPKSCNQHLYPSVKLFLEHVHKLTKEGRKICALEEEIVEFRRLSDLNIAANLECTQLRHERDNAILQVDEFRGQNDLVRLQIEEAKKECDQLRHELDNAMRQVDEFRGQNDLVRLQIEESKKECNQLRHERDNAVRQIDALLNQNTVGRIQIEEAKMECSQLKHERDNAVRQVDELWDRNSQFILEFRFTCLEQATEHFKDLCKIGDTEYGCVYKGIINNTTVAIKLSKSESLFQQEVSVLRQGGRHANIVTFVGMCSEVSALVYEWLPKGNLEDRILCADDTPPLSWHIRTQIIREVCCALLFLHSHKPNASVHGDLRPCNILIGADYRSKLYNFGMSTLFLQPGSCPPNLTSRLPYTDPEFLTIGDLTPLSDVYSLGVIILRLLTGMPPLAITKKVREAFRSDNLHLLIDKSAGDWPYTQAKQLALLGLRCVEMTREKRPDLTEVWTVVEALVRKPPAPSCPAHFICPILQEIMNDPQMASDGFTYEAEAIRRWLDGGSNRSPMTNLALPNRVLIPNRALRSSIQEYLQASVAKAVSSLNLNL
Length659
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.287
Instability index52.52
Isoelectric point5.87
Molecular weight75481.81
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24120
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     261.87|      33|      33|     181|     213|       1
---------------------------------------------------------------------------
  153-  178 (41.66/23.36)	...EFRRLSD...LN.....I.AANLECTQLRHERDNA
  181-  213 (67.67/42.36)	QVDEFRGQNDLVRLQ.....IEEAKKECDQLRHELDNA
  216-  248 (68.20/42.74)	QVDEFRGQNDLVRLQ.....IEESKKECNQLRHERDNA
  251-  283 (58.74/35.83)	QIDALLNQNTVGRIQ.....IEEAKMECSQLKHERDNA
  286-  316 (25.59/11.61)	QVDELWDRNSQFILEfrftcLEQATEHFKDL.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     262.25|      63|     320|      61|     132|       2
---------------------------------------------------------------------------
    5-   57 (67.20/31.95)	FSAD..VKLFLEV.FN.P...CSPRNLNREYLLVFLKFYDPEQTQLRYigtlfVSCS........SR....P.......
   70-  132 (115.62/77.58)	FCADEEIELYEEIKFE.PNVMCEALDIHHTFTVNQIENGDIICFQKRP.....KSCN........QHLY..PSVKLFLE
  393-  458 (79.43/42.53)	.CADDTPPLSWHIRTQiIREVCCALLFLHSHKPNASVHGDL.....RP.......CNiligadyrSKLYnfGMSTLFLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24120 with Med32 domain of Kingdom Viridiplantae
Unable to open file!