<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24117

Description Uncharacterized protein
SequenceQVARDEDLRSQIGSGGFYFDLVDFDRVRAFQVPVDTTVILFMEELAKELGTPVKFQRLWLCQRRQNGTRRPSRPLNSKEKKLSIGRVFSADVKLFLEVFNPCSPRNLNREYLLVFLKFYDPEQTQLRYIGTLFVSCSSRPLDILPKLRSLAGFCADEEIELYEEIKFEPNVMCEALDIHHTFTVNQIENGDIICFQKRPKSCNQHLYPSVKLFLEHVHKLTKEGRKICALEEEIVEFRRLSDLNIAANLECTQLRHERDNAILQVDEFRGQNDLVRLQIEEAKKECDQLRHELDNAMRQVDEFRGQNDLVRLQIEESKKECNQLRHERDNAVRQIDALLNQNTVGRIQIEEAKMECSQLKHERDNAVRQVDELWDRNSQFILEFRFTCLEQATEHFKDLCKIGDTEYGCVYKGIINNTTVAIKLSKSESLFQQEVSVLRQGGRHANIVTFVGMCSEVSALVYEWLPKGNLEDRILCADDTPPLSWHIRTQIIREVCCALLFLHSHKPNASVHGDLRPCNILIGADYRSKLYNFGMSTLFLQPGSCPPNLTSRLPYTDPEFLTIGDLTPLSDVYSLGVIILRLLTGMPPLAITKKVREAFRSDNLHLLIDKSAGDWPYTQAKQLALLGLRCVEMTREKRPDLTEVWTVVEALVRKPPAPSCPAHFICPILQEIMNDPQMASDGFTYEAEAIRRWLDGGSNRSPMTNLALPNRVLIPNRALRSSIQEYLQASVAKAVSSLNLNL
Length742
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.08
Grand average of hydropathy-0.321
Instability index53.18
Isoelectric point6.17
Molecular weight85149.77
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24117
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     261.87|      33|      33|     264|     296|       1
---------------------------------------------------------------------------
  236-  261 (41.66/21.91)	...EFRRLSD...LN.....I.AANLECTQLRHERDNA
  264-  296 (67.67/39.68)	QVDEFRGQNDLVRLQ.....IEEAKKECDQLRHELDNA
  299-  331 (68.20/40.04)	QVDEFRGQNDLVRLQ.....IEESKKECNQLRHERDNA
  334-  366 (58.74/33.58)	QIDALLNQNTVGRIQ.....IEEAKMECSQLKHERDNA
  369-  399 (25.59/10.92)	QVDELWDRNSQFILEfrftcLEQATEHFKDL.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     233.41|      68|     320|     144|     215|       2
---------------------------------------------------------------------------
   43-  152 (62.53/39.45)	....EELakELGTPVKFQ.RLWLCQRRQ.NGTRRPSRPLNS......KEKKlSIGRVFSADVKLFLEvfnpcsprnlnreyllvflkfydpeqtqlryigtlfvscssrpldiLPKL.RSLAG
  153-  226 (108.49/85.47)	FCADEEI..ELYEEIKFE.PNVMCEALDIHHTFTVNQIENGDIicfqKRPK.SCNQHLYPSVKLFLE.............................................hVHKLtKEGRK
  475-  519 (62.38/39.34)	LCADDTP..PLSWHIRTQiIREVCCALLFLHSHKPNASVHGDL.....RP...CN....................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.42|      10|      32|      99|     108|       3
---------------------------------------------------------------------------
   99-  108 (21.59/11.64)	FNPCSPRNLN
  133-  142 (19.83/10.13)	FVSCSSRPLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24117 with Med32 domain of Kingdom Viridiplantae
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