<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24100

Description Uncharacterized protein
SequenceMAKGGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIPGPADKPMIVVQYKGEEKQFAAEEISSMVLIKMKEIGEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEDIEKMVQEAERYKAEDEELKKKVEAKNALENYAYNMRNTIKDDKIASKLPAADKKKIEDAIDGAISWLDTNQLAEVDELEDKMKELEGVCNPIIAKMYQGAGADMGGMGGEDAPAGGSGAGPKIEEVD
Length647
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.374
Instability index32.19
Isoelectric point5.17
Molecular weight70624.46
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24100
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.43|      45|     189|     170|     218|       1
---------------------------------------------------------------------------
  170-  218 (63.18/52.26)	GLNVMRIINePTaAAIAYGLDKKAS.SSGEKNVLIFDLggGTFDVSLLTI
  362-  407 (72.25/43.79)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNEKVQDL..LLLDVTPLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.87|      16|      21|      13|      32|       2
---------------------------------------------------------------------------
   13-   28 (33.50/29.40)	DLG..TTYSCVGVWQHDR
   35-   52 (26.37/11.79)	DQGnrTTPSYVGFTDTER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     380.77|     124|     286|     228|     354|       3
---------------------------------------------------------------------------
  228-  354 (198.77/123.60)	TAGDTHLGGEDFDnRMVNHFV......QEFKRK.HKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEiDSLYEGVDFYSTITRARFEELN..M.DLFRKCMEPVEKCLRDAKMDKSTV..HDVVlVGGSTRIPKVQQ
  510-  645 (182.00/102.59)	TNDKGRLSKEDIE.KMVQEAErykaedEELKKKvEAKNALENYAYNMRNTIKDDKIASKLPAADKKKIE.DAIDGAISWLDTNQLAEVDELEdkMkELEGVCNPIIAKMYQGAGADMGGMggEDAP.AGGSGAGPKIEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24100 with Med37 domain of Kingdom Viridiplantae
Unable to open file!