<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24050

Description Uncharacterized protein
SequenceRSQAPHGPLPRTPADSPLPPPRRRGTPMASTGGGTGGGRHWLEDEAPDLRSRIRQTLTSKLARYYQPRYAPDSQEAQRFVANFEEVAFRGTNSKEDYMRNISSKLLIMEKKTSGLLERRMQSRSQLRLANAAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGPGVSLWQMQSGASQSQSQHASRQAQTTNYVGCSPPSVSKPAGGPNSLQNHLLGQNGSSVGRQQPQLTSMNQRSSRANQQEMGMQKYQMLGAQQTDISKMQPSQLGGWNNQKDTRKTNLLQSSVKASEREPMTPPLQQIAGAQQSTLLCQSSQNTAMMGSAREYDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKLDFPKYKEDVQKLVAYIERGKAHNAEMNTGYQLPNCREQPQVINLPGNASSTSGGKSRQQKQPADTSILQSRQTYMARTPPPREQSNGNHFSSSMLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGAGDRTSVTEKPIDRLMAAVSVPHG
Length649
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.761
Instability index60.98
Isoelectric point9.85
Molecular weight71112.46
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24050
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.16|      37|      48|     277|     313|       1
---------------------------------------------------------------------------
  225-  256 (39.51/19.35)	.SQSQHASRQAQ.......TTNYVGCSPPSVSKPAggPNS
  277-  313 (66.36/37.88)	TSMNQRSSRANQQE.MGMQKYQMLGAQQTDISKMQ..PSQ
  326-  362 (52.28/28.16)	TNLLQSSVKASEREpMTPPLQQIAGAQQSTL.LCQ..SSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.43|      29|      50|      81|     130|       2
---------------------------------------------------------------------------
   87-  115 (49.10/43.88)	AFRGTN....SKEDYMRNISSKLLIMEKKTSGL
  134-  166 (48.33/12.24)	ALQGGNpsvrPEAGMMATPGPTSQPMTPQTSGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.79|      15|     385|      67|      84|       3
---------------------------------------------------------------------------
   67-   84 (23.78/22.62)	PRYAPDsqeAQRFVANFE
  455-  469 (27.02/16.50)	PKYKED...VQKLVAYIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.36|      15|      34|     543|     557|       4
---------------------------------------------------------------------------
  543-  557 (26.77/15.81)	SSSML..ESLTPSPVAN
  578-  594 (21.59/11.30)	SAFLLhgNSAAPAPKAN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24050 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGAGDRTSVTEKPIDRLMAAVSV
2) MEKKTSGLLERRMQSRSQLRLANAAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGPGVSLWQMQSGASQSQSQHASRQAQTTNYVGCSPPSVSKPAGGPNSLQNHLLGQNGSSVGRQQPQLTSMNQRSSRANQQEMGMQKYQMLGAQQTD
3) MNTGYQLPNCREQPQVINLPGNASSTSGGKSRQQKQPADTSILQSRQTYMARTPPPREQSNGNHFSSSMLESLTPSPVANPVIAPASRCDP
4) RSQAPHGPLPRTPADSPLPPPRRRGTPMASTGGGTGGGRHWLEDEAPDLRSRIRQTL
5) SKMQPSQLGGWNNQKDTRKTNLLQSSVKASEREPMTPPLQQIAG
580
108
478
1
307
646
305
568
57
350










Molecular Recognition Features






MoRF SequenceStartStop




1) KLARYYQPRY
60
69