<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24047

Description Uncharacterized protein
SequenceKTRLASAEERERPRSQAPHGPLPRTPADSPLPPPRRRGTPMASTGGGTGGGRHWLEDEAPDLRSRIRQTLTSKLARYYQPRYAPDSQEAQRFVANFEEVAFRGTNSKEDYMRNISSKLLIMEKKTSGLLERRMQSRSQLRLANAAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGPGVSLWQMQSGASQSQSQHASRQAQTTNYVGCSPPSVSKPAGGPNSLQNHLLGQNGSSVGRQQPQLTSMNQRSSRANQQEMGMQKYQMLGAQQTDISKMQPSQLGGWNNQKDTRKTNLLQSSVKASEREPMTPPLQQIAGAQQSTLLCQSSQNTAMMGSAREYDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKLDFPKYKEDVQKLVAYIERGKAHNAEMNTGYQLPNCREQPQVINLPGNASSTSGGKSRQQKQPADTSILQSRQTYMARTPPPREQSNGNHFSSSMLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGAGDRTSVTEKPIDRLMAAIRSSSPAALRSSANSIWSVLSMSDTIPHGQIGTVLDGTSSQQQRGGSNTARKMKRVFNDTAAHSESLPLGSMDGSCMTFECDASDSGSSSEQNIKRPKTQVTRLVISFLLSF
Length768
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.729
Instability index62.61
Isoelectric point9.82
Molecular weight83983.68
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24047
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.57|      26|      36|     542|     575|       1
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  542-  570 (44.00/40.31)	RTPP..PREqsnGNHFSSSML..ESLTPSPVAN
  578-  607 (38.58/16.45)	RCDPliPMD...VDSISAFLLhgNSAAPAPKAN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     156.39|      37|      48|     290|     326|       2
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  238-  288 (36.78/13.49)	.SQSQHASRQAQttNY.VGcsppsvskpaggpnsLQNH.LLGQNGSSVGRQQP.Q
  290-  326 (66.96/29.62)	TSMNQRSSRANQ..QE.MG...............MQKYQMLGAQQTDISKMQPSQ
  339-  375 (52.66/21.98)	TNLLQSSVKASE..REpMT...............PPLQQIAGAQQSTL.LCQSSQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.72|      26|      31|     442|     472|       3
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  445-  472 (37.36/32.17)	IRKILNFLLLEK...SDVNEGLKLdfPKYKE
  474-  502 (40.36/19.91)	VQKLVAYIERGKahnAEMNTGYQL..PNCRE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.67|      18|      32|     612|     630|       4
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  612-  630 (27.92/16.61)	VTpTKP..TLPASPRQADIAA
  645-  664 (26.75/11.20)	VT.EKPidRLMAAIRSSSPAA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.99|      24|      40|     687|     711|       5
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  687-  711 (36.97/28.20)	IGTvLDGT....SSQQQRGGSNTARKMKR
  725-  752 (36.03/22.33)	LGS.MDGScmtfECDASDSGSSSEQNIKR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.65|      12|     104|     153|     169|       6
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  153-  169 (19.49/17.90)	PSVRPEAGmmatpGPTS
  258-  269 (24.16/10.18)	PSVSKPAG.....GPNS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.53|      36|     337|     174|     214|      10
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  174-  214 (57.03/45.63)	PQTSGLvPNQQMVYPRNKNLQteveQKHPGVMKILDQRPKF
  504-  539 (62.49/36.75)	PQVINL.PGNASSTSGGKSRQ....QKQPADTSILQSRQTY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24047 with Med15 domain of Kingdom Viridiplantae
Unable to open file!