<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24046

Description Uncharacterized protein
SequencePRSQAPHGPLPRTPADSPLPPPRRRGTPMASTGGGTGGGRHWLEDEAPDLRSRIRQTLTSKLARYYQPRYAPDSQEAQRFVANFEEVAFRGTNSKEDYMRNISSKLLIMEKKTSGLLERRMQSRSQLRLANAAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGPGVSLWQMQSGASQSQSQHASRQAQTTNYVGCSPPSVSKPAGGPNSLQNHLLGQNGSSVGRQQPQLTSMNQRSSRANQQEMGMQKYQMLGAQQTDISKMQPSQLGGWNNQKDTRKTNLLQSSVKASEREPMTPPLQQIAGAQQSTLLCQSSQNTAMMGSAREYDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKLDFPKYKEDVQKLVAYIERGKAHNAEMNTGYQLPNCREQPQVINLPGNASSTSGGKRQQKQPADTSILQSRQTYMARTPPPREQSNGNHFSSSMLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGAGDRTSVTEKPIDRLMAAVSVPHG
Length649
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.762
Instability index61.07
Isoelectric point9.85
Molecular weight71122.50
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24046
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.16|      37|      48|     278|     314|       1
---------------------------------------------------------------------------
  226-  257 (39.51/19.22)	.SQSQHASRQAQ.......TTNYVGCSPPSVSKPAggPNS
  278-  314 (66.36/37.55)	TSMNQRSSRANQQE.MGMQKYQMLGAQQTDISKMQ..PSQ
  327-  363 (52.28/27.94)	TNLLQSSVKASEREpMTPPLQQIAGAQQSTL.LCQ..SSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     209.95|      50|     322|     163|     212|       2
---------------------------------------------------------------------------
  112-  155 (66.61/30.52)	KTSGLLERrmQSRSQLRLANAAQALQGGNPSV......RP..EAGMMATPGP
  163-  212 (89.12/43.12)	QTSGLVPN..QQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGP
  503-  533 (54.22/23.58)	STSG..................GKRQQKQPADTSILQSRQTYMAR...TPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.08|      29|      29|     435|     463|       3
---------------------------------------------------------------------------
  411-  437 (39.52/26.44)	QFLSLPAA...KANEYKRKAYA..KRSIRKIL
  438-  466 (46.17/32.16)	NFLLLEKS...DVNEGLKLDFPKYKEDVQKLV
  467-  493 (30.39/18.57)	AYIERGKAhnaEMNTGYQL..PNCREQPQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.59|      47|     585|       1|      48|       4
---------------------------------------------------------------------------
    1-   48 (85.65/46.66)	PRSQApHGPLPRTPADSPLP.PPRRRGTPMASTGGGTGGGRHWLEDEAP
  589-  636 (76.94/37.42)	PAPKA.NGSNQVTPTKPTLPaSPRQADIAAGQAEVQAGAGDRTSVTEKP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24046 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGAGDRTSVTEKPIDRLMAAVSV
2) KLARYYQPRYAPDSQEAQRFVANFEEVAFRGTNSKE
3) MEKKTSGLLERRMQSRSQLRLANAAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGPGVSLWQMQSGASQSQSQHASRQAQTTNYVGCSPPSVSKPAGGPNSLQNHLLGQNGSSVGRQQPQLTSMNQRSSRANQQEMGMQKYQMLGAQQTD
4) MNTGYQLPNCREQPQVINLPGNASSTSGGKRQQKQPADTSILQSRQTYMARTPPPREQSNGNHFSSSMLESLTPSPVANPVIAPASRCDP
5) PRSQAPHGPLPRTPADSPLPPPRRRGTPMASTGGGTGGGRHWLEDEAPDLRSRIRQTL
6) SKMQPSQLGGWNNQKDTRKTNLLQSSVKASEREPMTPPLQQIAG
580
61
109
479
1
308
646
96
306
568
58
351










Molecular Recognition Features






MoRF SequenceStartStop




1) KLARYYQPRY
61
70