<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24042

Description Uncharacterized protein
SequenceEDYMRNISSKLLIMEKKTSGLLERRMQSRSQLRLANAAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGPGVSLWQMQSGASQSQSQHASRQAQTTNYVGCSPPSVSKPAGGPNSLQNHLLGQNGSSVGRQQPQLTSMNQRSSRANQQEMGMQKYQMLGAQQTDISKMQPSQLGGWNNQKDTRKTNLLQSSVKASEREPMTPPLQQIAGAQQSTLLCQSSQNTAMMGSAREYDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKLDFPKYKEDVQKLVAYIERGKAHNAEMNTGYQLPNCREQPQVINLPGNASSTSGGKRQQKQPADTSILQSRQTYMARTPPPREQSNGNHFSSSMLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGAGDRTSVTEKPIDRLMAAIRSSSPAALRSSANSIWSVLSMSDTIPHGQIGTVLDGTSSQQQRGGSNTARKMKRVFNDTAAHSESLPLGSMDGSCMTFECDASDSGSSSEQNIKRPKTQNVNDALLKEIKSINDTLIDTVVSISMDGIAPYDGGTTIKLSYSAVSLSPTVKSLFATSEMSLVLPVKLFVPADYPSSSPVPINDEGDEVPRRNSTTISASVDVAFRHALRGLLEPWSIEAVARAWDACVRKAVTQFAHRLGGGTVNSIFGGWERCTAA
Length806
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.543
Instability index59.54
Isoelectric point9.35
Molecular weight87447.76
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24042
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     277.20|      52|      53|      90|     141|       1
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   41-   85 (64.06/32.15)	LQGGNPSV......RP..EAGMMATPGPtS.QPMTPQTSGLVPNQQMVYPRNKN
   90-  141 (86.79/46.41)	VEQKHPGVMKILDQRPKFQPKEITTVGP.G.VSLWQMQSGASQSQSQHASRQAQ
  146-  194 (76.25/39.80)	VGCSPPSVSKPAGGPNSLQNHLLGQNGS.S.VGRQQPQLT...SMNQRSSRANQ
  196-  241 (50.10/23.40)	....EMGMQKY..QMLGAQQTDISKMQP.SqLGGWNNQKDTRKTNLLQSSVKA.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.65|      22|      53|     438|     459|       2
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  438-  459 (38.53/20.36)	PREQSNGNHFSSSML..ESLTPSP
  473-  496 (29.30/13.73)	PLIPMDVDSISAFLLhgNSAAPAP
  498-  515 (22.82/ 9.07)	....ANGSNQVTPTK..PTLPASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.20|      22|      32|     335|     366|       3
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  335-  366 (21.20/36.99)	KRSirKILNflllekSDVNEGLKLdfPKYKED
  375-  396 (41.00/26.13)	ERG..KAHN......AEMNTGYQL..PNCREQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.94|      39|      59|     523|     563|       5
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  523-  563 (59.55/39.42)	GQAEVQAGAGDRTSVTEKPIDRLMAAIRSSSPaaLRSSANS
  585-  623 (67.39/39.45)	GTSSQQQRGGSNTARKMKRVFNDTAAHSESLP..LGSMDGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24042 with Med15 domain of Kingdom Viridiplantae
Unable to open file!