<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24036

Description Uncharacterized protein
SequenceAPHGPLPRTPADSPLPPPRRRGTPMASTGGGTGGGRHWLEDEAPDLRSRIRQTLTSKLARYYQPRYAPDSQEAQRFVANFEEVAFRGTNSKEDYMRNISSKLLIMEKKTSGLLERRMQSRSQLRLANAAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGPGVSLWQMQSGASQSQSQHASRQAQTTNYVGCSPPSVSKPAGGPNSLQNHLLGQNGSSVGRQQPQLTSMNQRSSRANQQEMGMQKYQMLGAQQTDISKMQPSQLGGWNNQKDTRKTNLLQSSVKASEREPMTPPLQQIAGAQQSTLLCQSSQNTAMMGSAREYDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKLDFPKYKEDVQKLVAYIERGKAHNAEMNTGYQLPNCREQPQVINLPGNASSTSGGKSRQQKQPADTSILQSRQTYMARTPPPREQSNGNHFSSSMLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGAGDRTSVTEKPIDRLMAAIRSSSPAALRSSANSIWSVLSMSDTIPHGQIGTVLDGTSSQQQRGGSNTARKMKRVFNDTAAHSESLPLGSMDGSCMTFECDASDSGSSSEQNIKRPKTQNVNDALLKEIKSINDTLIDTVVSISMDGIAPYDGGTTIKLSYSAVSLSPTVKSLFATSEMSLVLPVKLFVPADYPSSSPVPINDEGDEVPR
Length831
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.646
Instability index61.37
Isoelectric point9.45
Molecular weight90348.77
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24036
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     255.20|      52|      54|     181|     232|       1
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  137-  176 (40.93/14.52)	...............PSVRPEAGMMATPG.PTSQPMtpqTSGLVPNQQMVYPRNKN
  181-  232 (86.37/38.26)	VEQKHPGVMKILDQRPKFQPKEITTVGPG.VSLWQM...QSGASQSQSQHASRQAQ
  237-  285 (76.72/33.22)	VGCSPPSVSKPAGGPNSLQNHLLGQNGSS.VGRQQP...QLT...SMNQRSSRANQ
  287-  332 (51.18/19.88)	....EMGMQKY..QMLGAQQTDISKMQPSqLGGWNN...QKDTRKTNLLQSSVKA.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.65|      22|      53|     530|     551|       2
---------------------------------------------------------------------------
  530-  551 (38.53/20.12)	PREQSNGNHFSSSML..ESLTPSP
  565-  588 (29.30/13.57)	PLIPMDVDSISAFLLhgNSAAPAP
  590-  607 (22.82/ 8.98)	....ANGSNQVTPTK..PTLPASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.94|      39|      59|     615|     655|       3
---------------------------------------------------------------------------
  615-  655 (59.55/40.65)	GQAEVQAGAGDRTSVTEKPIDRLMAAIRSSSPaaLRSSANS
  677-  715 (67.39/40.68)	GTSSQQQRGGSNTARKMKRVFNDTAAHSESLP..LGSMDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.57|      20|      28|     408|     435|       4
---------------------------------------------------------------------------
  408-  427 (33.38/37.73)	FLSLPAAKANEYKRKAYAKR
  448-  467 (34.18/18.05)	KLDFPKYKEDVQKLVAYIER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24036 with Med15 domain of Kingdom Viridiplantae
Unable to open file!