<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24031

Description Uncharacterized protein
SequenceMSCQTVPVADNMCADDKLDAMDDDEILASIDVDRIVMEHYEATNTPRGLASRQMSTPSGNKCNFTGSDDNSLPQELSEICSHGYKLAFCPELNYHLQGMKDQLIAVSNKLLDGSGELNPQHSEELRQQRAHLNKQIQILGDYMARPTQDDERQRSHSMASTTAAEGHHPPMTPSTFVDNNRSQSQFYDMNAPWDGGSCYTPAPCTYMDSNIPLTSVQRDYTRRNIDISYTDGSGDKKWSSTDFPWTKELEVHNKRVFGNRSFRPNQREIINATMNGSDVFVLMPTGGGKSLTYQLPALIDEGITLVVCPLVSLIQDQIMHLSQANIPATYLSANLEWTEQQRILRDLMSPTSTCNYKLLYVTPEKIAKSDALLRQLEILYSRGYLSRIVIDEAHCVSQWGHDFRPDYQHLGLLKQKFPETPVLALTATATASVKEDVVQALGLANCVVFKQSFNRPNLRYIVMPKTKKCLEDIDCFIRENHPKECGIIYCLSRMDCEKVAEKLREYGHQASHYHGNMEPSDRAAVQRLWSMDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMITQGSAEQVRSSSSSSHGQALATHKENLLCMVSYCENDVDCRRLLQLIHFGETFDPSHCSKTCDNCKKGLRWIEKDVTNIAKQLVELVLTTRQSCSSSHILEVYRGSLNQNVKKNHHDILPLHGAGKNLAKGEAARVLRHLVTEGILTEDVKKSDTYGSVSSVLKANQVKVGGLRSGKQIVLKFPTADKAPKMGKLDESSISQVNKTVQRQSEMDENFSSLLYETLRILRSQIAEGTAGCGVHHIFKNETLKEISTRIPRTKEELLEINGIGKVKLNKYGDRVLATIEEFLNQFPNGSKRSSSSGGSNEQNEAVKKRRGFPAIHTSGNGNDFEERTVQSKKHTGKTRNGKQGIPDAASVIQDVRYIDVDLDGCEEVDELCSSVQQPLASGRVLPKWTAGGNATTPNIFEEFKYTN
Length1013
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.530
Instability index49.80
Isoelectric point6.82
Molecular weight113410.93
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24031
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.25|      24|      24|     108|     131|       1
---------------------------------------------------------------------------
  108-  131 (41.19/28.28)	NKLLDGSGELNPQHSEELRQQRAH
  133-  156 (40.05/27.28)	NKQIQILGDYMARPTQDDERQRSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     358.29|     115|     140|     483|     619|       2
---------------------------------------------------------------------------
  483-  609 (186.44/158.79)	KE...CGIIYCLSRMDCEKVAeKLREYGHQASHYHGNmEPSDRAAVQRLW.SMDKINIICATVAFGM....GINKPDVRFVIHHSLPKSIEGYHQEC....GrAGRDGQRsscvlyynySDYIRV.KHMITQG.SAEQVRS
  623-  751 (171.84/129.29)	KEnllCMVSYCENDVDCRRLL.QLIHFGETFDPSHCS.KTCDNCKKGLRWiEKDVTNIAKQLVELVLttrqSCSSSHILEVYRGSLNQNVKKNHHDIlplhG.AGKNLAK.........GEAARVlRHLVTEGiLTEDVKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.62|      21|     189|     249|     270|       3
---------------------------------------------------------------------------
  249-  270 (35.26/29.43)	LEVHNKRVFgNRSF.RPNQREII
  441-  462 (35.35/23.68)	LGLANCVVF.KQSFnRPNLRYIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.00|      16|     121|     203|     218|       6
---------------------------------------------------------------------------
  203-  218 (31.62/18.69)	PCTYMDSNIPLTSVQR
  327-  342 (30.38/17.70)	PATYLSANLEWTEQQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.74|      17|      22|     849|     865|       7
---------------------------------------------------------------------------
  849-  865 (27.34/18.81)	LKEISTRIPRTKEELLE
  874-  890 (28.39/19.82)	LNKYGDRVLATIEEFLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.21|      38|     217|      65|     107|       8
---------------------------------------------------------------------------
   65-  107 (58.38/56.32)	TGSdDNSLPQELSEICSHGYKLAFCPELNYhlqgMKDQLIAVS
  285-  322 (65.83/46.00)	TGG.GKSLTYQLPALIDEGITLVVCPLVSL....IQDQIMHLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.65|      16|      22|     901|     916|       9
---------------------------------------------------------------------------
  901-  916 (25.37/16.39)	SSGGSNEQNEAVKKRR
  924-  939 (26.28/17.26)	SGNGNDFEERTVQSKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.16|      15|      24|     946|     960|      10
---------------------------------------------------------------------------
  946-  960 (24.88/15.90)	NGKQGIPDAASVIQD
  969-  983 (26.28/17.23)	DGCEEVDELCSSVQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24031 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PNGSKRSSSSGGSNEQNEAVKKRRGFPAIHTSGNGNDFEERTVQSKKHTGKTRNGKQGIP
2) QIQILGDYMARPTQDDERQRSHSMASTTAAEGHHPPMTPSTFVDNNRSQ
893
135
952
183










Molecular Recognition Features






MoRF SequenceStartStop




1) NIFEEFKYTN
1004
1013