<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24027

Description Uncharacterized protein
SequencePFNMASLSSPWVEWAGEYTKAAQAEALPPNEWAARVATAAAAAGERGDVQFSAGLAEMLARVVLSGESSGAAPAAAWKYAEAALAARLASPALLLTLLSSRVIPQRVARPTAYRLYLELLRRHGFKLCFQMKAANSNKIRQLIDDNLNLSQIFGFSACEPGVFIVEFVLCILWQLVDTALDDESLLELTPEKKAQWPTRPQDISAFEVSFSEQKPEKIEKLQRMNSVITIELIGHLLHNKLILDDHNVHGENKHSLHKKFHPMVASNPLSSPNGHCLGGSYSALWTPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSRCGETDLSSHWKQKTATDDLRKELMLSLQALGDYESLLVPPPCIISAANQAASKAAMLVSGINSSSGYMESINESMLNYSGNMRHLIVESCISRNLLDTSAYYWPGYINGHVNSMSHAIPSQLAGWAAFMKGTPLTQSLVSVLVSSPASSLAELEKLFEVAVNGSDDDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDPADYSGRESQLIKHGPMLNVILTGISPVDYAPIFSFHGLVPELATVLMAICEVFGCLSPSVSWTLGAGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLSASSSSKSRSSQKQLPVTSSRSSQNPIFMDSFPKLKLWYRQHQACLASPLSGLAHGTPVHNIVDSLLNLMFRKANKGSTSIGSVSGSSSISNSSGPGDDGSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASTATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLATGGTTLGRLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVVQLLRSCFTSILGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVSRHGSDKLKRTKYAMGHGKISLATAMTQVKVAASLGATLVWLSGGTTLVQSLFQEMLPSWFLSAQDLDRGGASGGTVYKLGGHALAYFAVYSGMFAWGIDPTPVSRRRERVMRSHLEFLASALDGKISLGCNMSLWRAYVSGFLGLVVDRAPCLLHEVDLKVLKKLSIGLRQWKEKELAVAILCRGGPEAMGVAAELILDSEW
Length1283
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.08
Grand average of hydropathy0.140
Instability index42.04
Isoelectric point6.63
Molecular weight138876.50
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24027
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.62|      14|      16|    1007|    1022|       1
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 1007- 1021 (25.38/19.74)	SILGMSSTSlCCCGG
 1024- 1037 (29.24/12.98)	SLLGHGFGS.HCSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     335.43|     111|     299|     826|     939|       2
---------------------------------------------------------------------------
  278-  329 (39.05/17.65)	....GGS..........YSALWtPIDMY..LEDCLDGSIAATNSIeilsglVKALQA.VNRSSWHDAFM................................................................................................
  503-  578 (79.68/45.39)	...............................................................W.AAFMKGTPLTqslvsvlvsSPASSLAELEKLFE..VAVNGSDD.....................DKVSAATVLCGA..TLLRGWNFQEHTVrlVVKLLSH
  600-  670 (32.73/13.93)	VILTGISpvdyapifsfHG.LV.P.ELATVL.............................................................................maicevfgclspsvswtlgagEEISAHTVFSNAfiLLLRLWKF..............
  826-  939 (183.97/125.65)	AALTACS..........HGRLF.PRELATGLKDLADFLPASTATI......VSYFSAeVTRGVWKPAFMNGTDWP.........SPAANLSMVEEHIKkiVAATGVDV.....................PRLATGGTTLGR..LPLPLAAFVSLTI..TYKLDKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.11|      15|      15|      10|      24|       3
---------------------------------------------------------------------------
   10-   24 (30.33/16.84)	PWVEWAGEYTKAAQA
   28-   42 (27.78/14.85)	PPNEWAARVATAAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.12|      59|     367|     688|     788|       4
---------------------------------------------------------------------------
  414-  474 (97.85/53.86)	LLVPPPCIISAANQAASKAA...MLVSGINSSSG..YMESINESMLNYS...............GNMRHLIVESCIsrNLL
  696-  774 (81.27/107.12)	LLLRNSQVLSASSSSKSRSSqkqLPVTSSRSSQNpiFMDSFPKLKLWYRqhqaclasplsglahGTPVHNIVDSLL..NLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.18|      48|     734|     360|     407|       5
---------------------------------------------------------------------------
  360-  407 (80.51/50.81)	LLSIATLAVADIIEEADSRCGETDLS......SHWKQKTATDDLRKELMLSLQA
 1064- 1117 (71.67/44.43)	ILSLLMLSVKDIAETTVSRHGSDKLKrtkyamGHGKISLATAMTQVKVAASLGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.56|      62|    1078|      57|     120|       7
---------------------------------------------------------------------------
   57-  120 (95.71/52.62)	EMLARVVLSGES...SGAAPAAAWKYAEAALAARLASPALLLTLLSSRVIPQRvaRPTAYRLYLELL
 1135- 1199 (106.85/54.53)	EMLPSWFLSAQDldrGGASGGTVYKLGGHALAYFAVYSGMFAWGIDPTPVSRR..RERVMRSHLEFL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24027 with Med33 domain of Kingdom Viridiplantae
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