<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24016

Description Uncharacterized protein
SequenceMLNVILTGISPVDYAPIFSFHGLVPELATVLMAICEVFGCLSPSVSWTLGAGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLSASSSSKSRSSQKQLPVTSSRSSQNPIFMDSFPKLKLWYRQHQACLASPLSGLAHGTPVHNIVDSLLNLMFRKANKGSTSIGSVSGSSSISNSSGPGDDGSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASTATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLATGGTTLGRLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVVQLLRSCFTSILGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVSRHGSDKLKRTKYAMGHGKISLATAMTQVKVAASLGATLVWLSGGTTLVQSLFQEMLPSWFLSAQDLDRGGASGGTVYKLGGHALAYFAVYSGMFAWGIDPTPVSRRRERVMRSHLEFLASALDGKISLGCNMSLWRAYVSGFLGLVVDRAPCLLHEVDLKVLKKLSIGLRQWKEKELAVAILCRGGPEAMGVAAELILDSEW
Length687
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.08
Grand average of hydropathy0.265
Instability index43.23
Isoelectric point8.68
Molecular weight73830.85
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24016
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.82|      53|     210|     232|     321|       1
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  238-  302 (82.32/123.31)	GRLfPRELAtglkdladflpASTATIVSY...FSAEVTRGVWKPAFMN...GTDWPSPAANLSMVEEHIKK
  322-  380 (83.50/44.22)	GRL.PLPLA...........AFVSLTITYkldKASERFLNLAGPALENlaaSCPWPSMAIVAALWTQKVKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.62|      14|      16|     411|     426|       2
---------------------------------------------------------------------------
  411-  425 (25.38/18.62)	SILGMSSTSlCCCGG
  428-  441 (29.24/12.23)	SLLGHGFGS.HCSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.87|      51|     477|      21|      80|       4
---------------------------------------------------------------------------
   21-   72 (84.59/56.90)	HGLVPELAT...VLMAICEVFGCLSPSVSWT....LGAGEEISAH.TVFSNAFiLLLRLW
   88-  146 (70.29/30.75)	APVGSQLTPeylLLLRNSQVLSASSSSKSRSsqkqLPVTSSRSSQnPIFMDSF.PKLKLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.46|      41|     106|     479|     520|       5
---------------------------------------------------------------------------
  479-  520 (64.43/40.69)	IAETTVSRHgSDKLKRTKY....AMGHGKISLATAMT..QVKVAASLG
  583-  629 (63.04/35.39)	IDPTPVSRR.RERVMRSHLeflaSALDGKISLGCNMSlwRAYVSGFLG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24016 with Med33 domain of Kingdom Viridiplantae
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