<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24006

Description Uncharacterized protein
SequenceMSLVAFQQLILDDHNVHGENKHSLHKKFHPMVASNPLSSPNGHCLGGSYSALWTPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSRCGETDLSSHWKQKTATDDLRKELMLSLQALGDYESLLVPPPCIISAANQAASKAAMLVSGINSSSGYMESINETGNMRHLIVESCISRNLLDTSAYYWPGYINGHVNSMSHAIPSQLAGWAAFMKGTPLTQSLVSVLVSSPASSLAELEKLFEVAVNGSDDDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDPADYSGRESQLIKHGPMLNVILTGISPVDYAPIFSFHGLVPELATVLMAICEVFGCLSPSVSWTLGAGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLSASSSSKSRSSQKQLPVTSSRSSQNPIFMDSFPKLKLWYRQHQACLASPLSGLAHGTPVHNIVDSLLNLMFRKANKGSTSIGSVSGSSSISNSSGPGDDGSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASTATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLATGGTTLGRLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVVQLLRSCFTSILGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVSRHGSDKLKRTKYAMGHGKISLATAMTQVKVAASLGATLVWLSGGTTLVQSLFQEMLPSWFLSAQDLDRGGASGGTVYKLGGHALAYFAVYSGMFAWGIDPTPVSRRRERVMRSHLEFLASALDGKISLGCNMSLWRAYVSGFLGLVVDRAPCLLHEVDLKVLKKLSIGLRQWKEKELAVAILCRGGPEAMGVAAELILDSEW
Length1046
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy0.171
Instability index42.98
Isoelectric point6.71
Molecular weight112797.80
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24006
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.99|      57|     103|     266|     328|       1
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  266-  328 (87.56/70.33)	WAAFMKGTP......................LTQSLVSVLVsspasSLAELEKLFEVAVN...GSDDDkVSAATVLCGA..TLLRGWNFQ
  351-  434 (77.43/47.87)	ESQLIKHGPmlnviltgispvdyapifsfhgLVPELATVLM.....AICEVFGCLSPSVSwtlGAGEE.ISAHTVFSNAfiLLLRLWKFN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     245.23|      93|     226|     499|     613|       2
---------------------------------------------------------------------------
  499-  551 (75.01/74.28)	...............................................................FPKLKLWYRQHQ....ACLASPLSGLAHGTP.VHNIVDSLLNLMFRKA...NKGSTSIGSV
  570-  613 (38.75/25.79)	LWPQLPAWEILEAVPFVVDAALTACSHGRLfpreLATGLKDLAD................................................................................
  801-  920 (131.47/83.81)	LSPVAPGILYLRIFRCIKDCSILAEDILSL....LMLSVKDIAEttvsrhgsdklkrtkyamgHGKISLATAMTQvkvaASLGATLVWLSGGTTlVQSLFQEMLPSWFLSAqdlDRGGASGGTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     271.46|      84|     102|      41|     127|       3
---------------------------------------------------------------------------
   41-  127 (138.38/97.13)	NGHCLGGSYSALW...TPIDmYLEDCLDGSIAATNSIEILsgLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIE..GPVPHLETRLCM
  144-  232 (133.08/83.06)	DSRCGETDLSSHWkqkTATD.DLRKELMLSLQALGDYESL..LVPPPCIISAANQAASKAAMLVSGINSSSGYMESINetGNMRHLIVESCI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.75|      13|      14|     771|     784|       5
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  771-  784 (23.45/12.61)	ILGMSSTSlCCCGG
  788-  800 (27.30/11.29)	LLGHGFGS.HCSGG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24006 with Med33 domain of Kingdom Viridiplantae
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