<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24004

Description Uncharacterized protein
SequenceQVYSECQITLKIPKSILYGSDFMVMGFPWRTNAYYLLMQLDDNLMPVFYLLEVHIDGEDRSNIDTTTDAKEVVRFNRIDIGQMQLGEDECIANLLDVEKLQVLQSMEDGSPGHSEIDESLPLKPSFSSVVNAVLGYERDSPSKENWLSYSSPSTHLSSQKVGRQGVSSRAGPPELDDELLHSNIDTAKVASGVTLDSYLLSNSKSANSTETSVSVPAGLENISALRSEVPSGKRYLSEFLLNIPSLQRSIISGGPRKRRKLPEDASSVQSRTTLTYGTILREGNCCITENIYASVLLQVIKHCSLRIKYAQLTTQMNSLNIPYVEEVGLGTPSSNLWLRLPFAQDGSWKHTCLRLGEAGSMSWGVRINDPYYGALWELHGGSNTTEWGSHVRIANTSEMDSHISFDYDGVTLTYNSVEADSIQRLVSELRRLSNARVFACGMRRLVRIKVDEKLVENQLATKAKLHARKGFRNRLSDQMAKNFRINAVGLMNLWFSYGANAMPMVHFVVEWDASKAGCTMRISPDHLWPHTKFLEDFVNCNEVASFLDCIRLTAGPLLSLGGAIRPAKMPAVPAVCGSAQKQNNVLLANGSSSTTVHINSHDAQTSSMLSAVGWTGHGLVPSSLMPFDVSVVLRGPYWIRIIYRNKFSVDMRCFAGDQVWLQPATPPKGGPSIGGSLPCPQFRPFIMEHVAQGLNTLEPSFLNARHTSANTSSGSQQIAASVSRAGNATLPSGDGAPAHLSPDTNLPVHMKGELNTAFIGLGDDGGYGGGWVPHAALKKVLRGILKYLGVLWLFAQLRDILKDILGSVLKDNEGALLNLDQEQPALRFFVGGYVFAVSVQRVQLHLQVLNVKRFHHQQQQQQAPQSSAQGELTPSEIHEICDYFSRCVVCEPYDASRIASFIMLLTLPISVIQEFVKLITWNKSLSEAHGDIAAAERARAELCLEKHPRSVSDDYTEPSLLSKSNIQHDRANNSVDFTLTFVLDHNLTPHVRTSGGAAWLPFCVSLRLRYTFGDTSHIAYLAMDGSHGGRSCWLQHEDWERCKQSVVKAVKMVNGSPAGGETSRGRLQMVAEMVQKQLQLCLVHLRDGSLSAGSTRP
Length1097
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.194
Instability index50.16
Isoelectric point6.85
Molecular weight120902.15
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24004
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     378.54|     125|     151|     488|     638|       1
---------------------------------------------------------------------------
  488-  638 (190.49/176.48)	VglmnlwfsYGAN.AMPMVHFVVE..W..DAS..KAGCTMRISpdhlWPHTKFlEDFVNcNEVA........SFLDcIRLTAGPLLSLGGAIrpakmpavpavCGSAQKQNNVLLANGSSSTT.........VHINSHDAQTSSMLSAVGWTGHGLVPSSLMPFDVSVVLR..GPYW
  642-  792 (188.05/115.93)	I........YRNKfSVDMRCFAGDqvWlqPATppKGGPSIGGS....LPCPQF.RPFIM.EHVAqglntlepSFLN.ARHTSANTSSGSQQI...........AASVSRAGNATLPSGDGAPAhlspdtnlpVHMKGELNTAFIGLGDDGGYGGGWVPHAALKKVLRGILKylGVLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.44|      14|      23|     356|     369|       2
---------------------------------------------------------------------------
  356-  369 (27.35/14.98)	GEAGSMSWG..VRIND
  380-  395 (22.09/10.80)	GGSNTTEWGshVRIAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.28|      38|     700|     303|     352|       3
---------------------------------------------------------------------------
  304-  352 (52.29/62.44)	SLRIKYaqltTQMNSLNIPYVEEVGlGTPSSNLWLrlpfaQDGSWKHtC
 1005- 1042 (74.99/44.13)	SLRLRY....TFGDTSHIAYLAMDG.SHGGRSCWL.....QHEDWER.C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     221.36|      65|     119|      98|     165|       4
---------------------------------------------------------------------------
   98-  165 (96.43/80.02)	EKLQVLQSmEDGSpGHSEIDESLPLKPSFS.SVVNA.VLGYERDSPSKENWLSYSSPSThLSSQKVGRQG
  181-  217 (29.63/13.09)	...............HSNIDTA...KVASG.VTLDSyLLSNSKSANSTET..SVSVPA............
  220-  283 (95.30/63.61)	ENISALRS.EVPS.GKRYLSEFLLNIPSLQrSIISG...GPRKRRKLPEDASSVQSRTT.LTYGTILREG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.27|      11|      22|     457|     467|       6
---------------------------------------------------------------------------
  457-  467 (17.35/10.74)	NQLATKAKLHA
  477-  487 (18.91/12.30)	DQMAKNFRINA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24004 with Med14 domain of Kingdom Viridiplantae
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