<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24001

Description Uncharacterized protein
SequenceQRVDRRGFENCCTNEVLQVRAYGKSYIHLGINIRSGGFLLQSPKNILPPSAVLDSEEALNKRSITPTEVFVSLKTRSILQLFAATGRFLGVKVYSECQITLKIPKSILYGSDFMVMGFPWRTNAYYLLMQLDDNLMPVFYLLEVHIDGEDRSNIDTTTDAKEVVRFNRIDIGQMQLGEDECIANLLDVEKLQVLQSMEDGSPGHSEIDESLPLKPSFSSVVNAVLGYERDSPSKENWLSYSSPSTHLSSQKVGRQGVSSRAGPPELDDELLHSNIDTAKVASGVTLDSYLLSNSKSANSTETSVSVPAGLENISALRSEVPSGKRYLSEFLLNIPSLQRSIISGGPRKRRKLPEDASSVQSRTTLTYGTILREGNCCITENIYASVLLQVIKHCSLRIKYAQLTTQMNSLNIPYVEEVGLGTPSSNLWLRLPFAQDGSWKHTCLRLGEAGSMSWGVRINDPYYGALWELHGGSNTTEWGSHVRIANTSEMDSHISFDYDGVTLTYNSVEADSIQRLVSELRRLSNARVFACGMRRLVRIKVDEKLVENQLATKAKLHARKGFRNRLSDQMAKNFRINAVGLMNLWFSYGANAMPMVHFVVEWDASKAGCTMRISPDHLWPHTKFLEDFVNCNEVASFLDCIRLTAGPLLSLGGAIRPAKMPAVPAVCGSAQKQNNVLLANGSSSTTVHINSHDAQTSSMLSAVGWTGHGLVPSSLMPFDVSVVLRGPYWIRIIYRNKFSVDMRCFAGDQVWLQPATPPKGGPSIGGSLPCPQFRPFIMEHVAQGLNTLEPSFLNARHTSANTSSGSQQVDTTMNRLSGGTPGEIKLTSGVGCQIAASVSRAGNATLPSGDGAPAHLSPDTNLPVHMKGELNTAFIGLGDDGGYGGGWVPHAALKKVLRGILKYLGVLWLFAQLRDILKDILGSVLKDNEGALLNLDQEQPALRFFVGGYVFAVSVQRVQLHLQVLNVKRFHHQQQQQQAPQSSAQGELTPSEIHEICDYFSRCVVCEPYDASRIASFIMLLTLPISVIQEFVKLITWNKSLSEAHGDIAAAERARAELCLEKHPRSVSDDYTEPSLLSKSNIQHDRANNSVDFTLTFVLDHNLTPHVRTSGGAAWLPFCVSLRLRYTFGDTSHIAYLAMDGSHGGRSCWLQHEDWERCKQSVVKAVKMVNGSPAGGETSRGRLQMVAEMVQKQLQLCLVHLRDGSLSAGSTRP
Length1213
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.185
Instability index51.31
Isoelectric point7.80
Molecular weight133495.53
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24001
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     583.72|     182|     194|     146|     339|       1
---------------------------------------------------------------------------
   40-  270 (258.16/184.02)	LQSpkNI....LPPSAVLDSEEALNKRSITPTEVFVS....LKTRSILQLFAATGRflgvKVYSEcqITLKIP...KsilygsdfmvmgfpwrtnayyllmqlddnlmpvfyllevhIDGEDRSNIDTTTDAKEVVRFNRIDIGQMQLGED.E.C.IA.NLLDVEKLQVLQSmEDGSPGHSEIDESLPLK.PSFSSVVNAV.........LGYERDSPSKENWLSYS...SPSTHLSSQKVGRQGVSS...RAGPPELDDEL
  271-  467 (224.49/179.38)	LHS..NIdtakVASGVTLDSYLLSNSKSANSTETSVSvpagLENISALRSEVPSGK....RYLSE..FLLNIPslqR......................................siISGGPRKRRKLPEDASSVQSRTTLTYGTI.LREG.NcC.ITeNIYASVLLQVI.K.......HC....SLRIKyAQLTTQMNSLnipyveevgLG....TPSSNLWLRLPfaqDGSWKHTCLRLGEAGSMSwgvRINDPYYGALW
  820-  908 (101.07/61.37)	.............................................................................................................................................TPGEIKLTSGvG.CqIA.ASVSRAGNATLPS.GDGAPAHLSPDTNLPVH.MK.GELNTAF.........IGLGDDGGYGGGWV.......P..HAALKKVLR.GIL........KYLGVLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.57|      34|     397|     692|     753|       2
---------------------------------------------------------------------------
  716-  753 (57.76/74.03)	MPFDVSVVLRGPY..WIRIIYrnkFSVDmRCFAGDQVWLQ
 1116- 1151 (61.80/25.00)	LPFCVSLRLRYTFgdTSHIAY...LAMD.GSHGGRSCWLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.59|      13|     440|     520|     535|       3
---------------------------------------------------------------------------
  503-  515 (21.38/16.45)	LTYNSVEADSIQR
  523-  535 (23.21/12.71)	LSNARVFACGMRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.70|      20|     281|     789|     813|       4
---------------------------------------------------------------------------
  789-  813 (32.05/31.82)	EPSFL...NARHTSANTSsgsqqVDTTM
 1073- 1095 (32.66/19.73)	EPSLLsksNIQHDRANNS.....VDFTL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24001 with Med14 domain of Kingdom Viridiplantae
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