<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23997

Description Uncharacterized protein
SequenceMVMGFPWRTNAYYLLMQLDDNLMPVFYLLEVHIDGEDRSNIDTTTDAKEVVRFNRIDIGQMQLGEDECIANLLDVEKLQVLQSMEDGSPGHSEIDESLPLKPSFSSVVNAVLGYERDSPSKENWLSYSSPSTHLSSQKVGRQGVSSRAGPPELDDELLHSNIDTAKVASGVTLDSYLLSNSKSANSTETSVSVPAGLENISALRSEVPSGKRYLSEFLLNIPSLQRSIISGGPRKRRKLPEDASSVQSRTTLTYGTILREGNCCITENIYASVLLQVIKHCSLRIKYAQLTTQMNSLNIPYVEEVGLGTPSSNLWLRLPFAQDGSWKHTCLRLGEAGSMSWGVRINDPYYGALWELHGGSNTTEWGSHVRIANTSEMDSHISFDYDGVTLTYNSVEADSIQRLVSELRRLSNARVFACGMRRLVRIKVDEKLVENQLATKAKLHARKGFRNRLSDQMAKNFRINAVGLMNLWFSYGANAMPMVHFVVEWDASKAGCTMRISPDHLWPHTKFLEDFVNCNEVASFLDCIRLTAGPLLSLGGAIRPAKMPAVPAVCGSAQKQNNVLLANGSSSTTVHINSHDAQTSSMLSAVGWTGHGLVPSSLMPFDVSVVLRGPYWIRIIYRNKFSVDMRCFAGDQVWLQPATPPKGGPSIGGSLPCPQFRPFIMEHVAQGLNTLEPSFLNARHTSANTSSGSQQIAASVSRAGNATLPSGDGAPAHLSPDTNLPVHMKGELNTAFIGLGDDGGYGGGWVPHAALKKVLRGILKYLGVLWLFAQLRDILKDILGSVLKDNEGALLNLDQEQPALRFFVGGYVFAVSVQRVQLHLQVLNVKRFHHQQQQQQAPQSSAQGELTPSEIHEICDYFSRCVVCEPYDASRIASFIMLLTLPISVIQEFVKLITWNKSLSEAHGDIAAAERARAELCLEKHPRSVSDDYTEPSLLSKSNIQHDRANNSVDFTLTFVLDHNLTPHVRTSGGAAWLPFCVSLRLRYTFGDTSHIAYLAMDGSHGGRSCWLQHEDWERCKQSVVKAVKMVNGSPAGGETSRGRLQMVAEMVQKQLQLCLVHLRDGSLSAGSTRP
Length1075
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.199
Instability index50.76
Isoelectric point6.82
Molecular weight118387.26
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23997
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     378.54|     125|     151|     466|     616|       1
---------------------------------------------------------------------------
  466-  616 (190.49/173.28)	VglmnlwfsYGAN.AMPMVHFVVE..W..DAS..KAGCTMRISpdhlWPHTKFlEDFVNcNEVA........SFLDcIRLTAGPLLSLGGAIrpakmpavpavCGSAQKQNNVLLANGSSSTT.........VHINSHDAQTSSMLSAVGWTGHGLVPSSLMPFDVSVVLR..GPYW
  620-  770 (188.05/113.85)	I........YRNKfSVDMRCFAGDqvWlqPATppKGGPSIGGS....LPCPQF.RPFIM.EHVAqglntlepSFLN.ARHTSANTSSGSQQI...........AASVSRAGNATLPSGDGAPAhlspdtnlpVHMKGELNTAFIGLGDDGGYGGGWVPHAALKKVLRGILKylGVLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.44|      14|      23|     334|     347|       2
---------------------------------------------------------------------------
  334-  347 (27.35/17.35)	GEAGSMSWG..VRIND
  358-  373 (22.09/12.55)	GGSNTTEWGshVRIAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.28|      38|     700|     281|     330|       3
---------------------------------------------------------------------------
  282-  330 (52.29/48.75)	SLRIKYaqltTQMNSLNIPYVEEVGlGTPSSNLWLrlpfaQDGSWKHtC
  983- 1020 (74.99/34.39)	SLRLRY....TFGDTSHIAYLAMDG.SHGGRSCWL.....QHEDWER.C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     221.36|      65|     119|      76|     143|       4
---------------------------------------------------------------------------
   76-  143 (96.43/65.92)	EKLQVLQSmEDGSpGHSEIDESLPLKPSFS.SVVNA.VLGYERDSPSKENWLSYSSPSThLSSQKVGRQG
  159-  195 (29.63/10.68)	...............HSNIDTA...KVASG.VTLDSyLLSNSKSANSTET..SVSVPA............
  198-  261 (95.30/52.38)	ENISALRS.EVPS.GKRYLSEFLLNIPSLQrSIISG...GPRKRRKLPEDASSVQSRTT.LTYGTILREG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.27|      11|      22|     435|     445|       6
---------------------------------------------------------------------------
  435-  445 (17.35/12.09)	NQLATKAKLHA
  455-  465 (18.91/13.84)	DQMAKNFRINA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23997 with Med14 domain of Kingdom Viridiplantae
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