<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23984

Description Uncharacterized protein
SequenceDAKSQTQTLGDAACGRMGAAEAPALAAAPAAGGGVGGEPLERRVMAAVKASEARGDPPLLRAVEISRLVAGEPGAGVPSADLAGILVSNLCFAHNSPSLWKLLDQAMSSRLLCPLHVLALLTARVLPQRRAQPEAYRLYLELLKGNVTSSSLSLLAGSNRDKITKSIDAALQLSKSYGVSGTDFGHVVILFVLIVITKLIDSVLEDCGISSGMTQDQESVYPIEGPQPMDMDVKGVSAVKQNEQREQLRRRNIVMALEVLHIMAADTKIQAFLRLICLNMPDKFSVLSQRLTLIEAHKMALERLLPTSHKIDDLVMYIWRVSNLDYQPNNKRLVGVLGNLRSSNSMLGQLTGAGRAACWIIFDIYMENAMDGRHLGGISAIEIIKEMSKTAQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDTRLCMLLALIPLAIAAILKEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANAAASKAAIFRANCKVVGGNPSMIGQSDSSTKAVGNMLHLIVEACISRNLIDTTAYLWPGYVVLPGHSKDTSLPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVAAALMPLCEAFGSMPPPSNHRSTIVDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSTGSFDEVPTQPIYIDSFPKLRAWYIQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEFLEAVPYVLEAVLTACYHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALHSIEDEVKEILASAGVQIHSCYPRTACFLFLCINLVALVHTMCDSLQVFSIIVAENLHQYLYYSVLIENFHFTLAGGVPPMLPLPMAALVSLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSSGSDITASRGVGALMGESITGHQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVIDCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPIMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHDLALSLLERGGPKTISAVVETLLQ
Length1401
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy0.185
Instability index49.47
Isoelectric point7.22
Molecular weight151528.94
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23984
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.65|      21|      78|    1079|    1103|       1
---------------------------------------------------------------------------
 1079- 1101 (39.30/24.56)	GSSWPSMPiiGALWTQKVRRWHD
 1160- 1180 (41.35/20.02)	GLHFPMAP..GFIYLRTCRTFHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     625.74|     197|     561|     620|     840|       2
---------------------------------------------------------------------------
  620-  840 (305.72/234.56)	IVCGASLVRGW..NIQEHvvrmvVKLLSPPLPSDSSLQgsmshylSQKSTLNAILLGVSYvDAVHIFSLY.GMVPDVaaaLMPLCEAFGSMPPPSNhrSTIVDETSVYSVFSCAflCLLRLWKFYKPPQEYCLAGRGGSVrLELTLDYLVLMHNSRIEFPNSSAT..STNSGSSTGSFDEVPT..QPIYIDSFPK....LRAWYIQNqacIASTLSGLGNTNPVHQVANKIL
 1193- 1400 (320.02/189.47)	IDCSHKLANGWssNGPPH.....LKSGRPPLSGAASMA.......SQVAMLGAGLLCVAG.GPLLVQVLYeETLPTL...LLSAQEQMLEDPGPVA..STLQGYAMANMLFFCG..SLLWGSEKTSPIMKLSFLSRRPRV.VGTHMDFIAGVLDGHILLGCDPGTwkAYVSCFVFLVVKFVPTwlRDIKLDTLKKiavgLRSWHEHD...LALSLLERGGPKTISAVVETLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.17|      58|     341|      60|     129|       3
---------------------------------------------------------------------------
   60-  129 (88.45/72.74)	LRAVEIS..RLV..AGEPGAG.VPSADlagilvSNLCFahnspsLWKLLDQAMSSRLLCPLHVLALLTARVLPQR
  403-  465 (87.72/49.73)	FKALWISalRLVqrAREPLEGpIPHLD......TRLCM......LLALIPLAIAAILKEETDACGAEGNKSLPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.30|      35|     565|     532|     582|       4
---------------------------------------------------------------------------
  532-  582 (46.90/74.26)	LIVEACIsRNlidttaylwPgyvvlPGHSKD..TSLPQeSPWVNFMQGAPL..SD
 1102- 1140 (56.39/38.10)	FIVLSCI.RS.........P.....FGRDKDavAQLIQ.SCFSSFLRSSPSsgSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.03|      28|      88|     933|     963|       7
---------------------------------------------------------------------------
  933-  963 (48.71/33.87)	YFSAEITR...GIWKAVPmngTEWPSPGAALHSI
 1022- 1052 (45.32/23.65)	YYSVLIENfhfTLAGGVP...PMLPLPMAALVSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23984 with Med33 domain of Kingdom Viridiplantae
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