<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23983

Description Uncharacterized protein
SequenceMALERLLPTSHKIDDLVMYIWRVSNLDYQPNNKRLVGVLGNLRSSNSMLGQLTGAGRAACWIIFDIYMENAMDGRHLGGISAIEIIKEMSKTAQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDTRLCMLLALIPLAIAAILKEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANAAASKAAIFRANCKVVGGNPSMIGQSDSSTKAVGNMLHLIVEACISRNLIDTTAYLWPGYVVLPGHSKDTSLPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVAAALMPLCEAFGSMPPPSNHRSTIVDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSTGSFDEVPTQPIYIDSFPKLRAWYIQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEFLEAVPYVLEAVLTACYHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALHSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSSGSDITASRGVGALMGESITGHQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVIDCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPIMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHDLALSLLERGGPKTISAVVETLLQ
Length1051
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy0.158
Instability index49.03
Isoelectric point7.53
Molecular weight113841.47
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23983
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     376.53|     115|     164|     527|     690|       1
---------------------------------------------------------------------------
  352-  402 (42.77/ 6.70)	........................SDSSLQGSM.........SHYlsQKSTLNA...ILLGVSYV.DAVHIFSLYGMVP..DVAAALMP..L...................................................................................................
  470-  548 (62.23/47.61)	MHNS.....RIEFPN.SSATSTN.SGSSTGSFDevptqpiyiDSF....PKLRAW....................................................................................................yiqnqaciastlsglgntnpVHQVAnkILSM.ICRK
  549-  707 (160.75/162.50)	MTKS.....GVVSGNLSSASSSSvSGSSLSTSD.........DSY..QRPTLPAW.EFLEAVPYVLEAVLTACYHGRISSRDMTTSLRD..LVDFL...PASLAAIV......SYFSAEIT..RGIwkAVPMngtewpSPGaalhsiedevkeilasagvqihscyprgvppmlpLPMAA..LVSLtITFK
  708-  818 (110.78/52.25)	LDRSldyihGIIGQALENCAG....GSSWPSMP.......iiGAL..WTQKVRRWhDFI.....VLSCIRSP..FGR..DKDAVAQLIQscFSSFLrssPSSGSDITasrgvgALMGESITghQGL..HFPM......APG..................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.66|      30|     159|       3|      38|       2
---------------------------------------------------------------------------
    3-   38 (43.91/47.71)	LERLLPTSHKIDDLVMYiwrvSNLDYQPNNkrLVGV
  164-  193 (51.76/35.25)	LPRRLGLVSSLQDLVQY....SGLLVPPSS..LVNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     304.63|     100|     166|      40|     158|       3
---------------------------------------------------------------------------
   40-  158 (148.22/145.62)	GNlrssNSMLGQlTGAGRAACWIIFDIYMENAMdGRHLGGISA.....IEIIKEMSKTAQAINEASWQETFkalwisalrlvQRArePLEGP.....IPHLDTRLCMLLALIPLAIAAILKEETDA....CGA
  213-  326 (156.41/106.80)	GN....PSMIGQ.SDSSTKAVGNMLHLIVEACI.SRNLIDTTAylwpgYVVLPGHSKDTSLPQESPWVNFM...........QGA..PLSDPlknalIATPASSVAELDKLYHIALNGSEQEKSAAakivCGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.66|      33|     166|     821|     855|       4
---------------------------------------------------------------------------
  821-  855 (54.49/57.83)	YLrTCRTFHDTYFVSEMiLRQV.IDCSHKLANGWSS
  990- 1023 (54.17/45.27)	YV.SCFVFLVVKFVPTW.LRDIkLDTLKKIAVGLRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.27|      43|      44|     900|     942|       5
---------------------------------------------------------------------------
  861-  895 (23.90/ 8.51)	...............LKSGRPplsgAASMASQVAMLGAGLLCvagGPLLV
  900-  942 (74.57/41.56)	EETLPTLLLSAQEQMLEDPGP....VASTLQGYAMANMLFFC...GSLLW
  945-  987 (72.80/40.41)	EKTSPIMKLSFLSRRPRVVGT....HMDFIAGVLDGHILLGC...DPGTW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23983 with Med33 domain of Kingdom Viridiplantae
Unable to open file!