<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23982

Description Uncharacterized protein
SequenceAVKASEARGDPPLLRAVEISRLVAGEPGAGVPSADLAGILVSNLCFAHNSPSLWKLLDQAMSSRLLCPLHVLALLTARVLPQRRAQPEAYRLYLELLKGNVTSSSLSLLAGSNRDKITKSIDAALQLSKSYGVSGTDFGHVVILFVLIVITKLIDSVLEDCGISSGMTQDQESVYPIEGPQPMDMDVKGVSAVKQNEQREQLRRRNIVMALEVLHIMAADTKIQAFLRLICLNMPDKFSVLSQRLTLIEAHKMALERLLPTSHKIDDLVMYIWRVSNLDYQPNNKRLVGVLGNLRSSNSMLGQLTGAGRAACWIIFDIYMENAMDGRHLGGISAIEIIKEMSKTAQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDTRLCMLLALIPLAIAAILKEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANAAASKAAIFRANCKVVGGNPSMIGQSDSSTKAVGNMLHLIVEACISRNLIDTTAYLWPGYVVLPGHSKDTSLPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVAAALMPLCEAFGSMPPPSNHRSTIVDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSTGSFDEVPTQPIYIDSFPKLRAWYIQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEFLEAVPYVLEAVLTACYHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALHSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSSGSDITASRGVGALMGESITGHQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVIDCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPIMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHDLALSLLERGGPKTISAVVETLLQ
Length1303
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy0.157
Instability index49.60
Isoelectric point7.91
Molecular weight141272.19
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23982
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     339.72|     107|     231|     744|     858|       1
---------------------------------------------------------------------------
  744-  858 (165.85/151.81)	GSfdEVPTQPIyIDSF..PKLRAWY.IQNQACIASTLSglGNTNPVHQVANKILSMICRKMTKSGvvSGNLSSASSSSVSGSSLsTSDDSYQRPTLPAWEFLEA......VPYVLEAVLTA...CYH
  981- 1099 (173.87/127.68)	GS..SWPSMPI.IGALwtQKVRRWHdFIVLSCIRSPFG..RDKDAVAQLIQSCFSSFLRSSPSSG..SDITASRGVGALMGESI.TGHQGLHFPMAPGFIYLRTcrtfhdTYFVSEMILRQvidCSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     200.13|      53|     228|      41|      95|       2
---------------------------------------------------------------------------
   41-   95 (84.99/57.21)	VSNLCFAHNSPSLWKLLDQAMSSRLLCpLHVLALLTArVLPQRRAQPEAYRLYLE
  228-  256 (34.56/15.34)	.......................RLIC.LNMPDKFS..VLSQRLTLIEAHKMALE
  275-  321 (80.57/45.57)	VSNLDYQPNNKRLVGVLGNLRSSN.....SMLGQLTG...AGRAACWIIFDIYME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.08|      43|     230|     339|     381|       3
---------------------------------------------------------------------------
  339-  381 (74.70/46.51)	KEMSKTAQAINEAS....W..QETFKALWISALRLVQRAREPLEGPIPH
  566-  614 (61.38/36.81)	QEKSAAAKIVCGASlvrgWniQEHVVRMVVKLLSPPLPSDSSLQGSMSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.56|      60|    1104|      96|     160|       4
---------------------------------------------------------------------------
   96-  160 (86.98/65.61)	LLKGNVTSSS...LSLLA......GSNRDKITKSIDAALQLsksyGVSGTDFGHVVILFVLIVItKLIDSVLED
 1192- 1260 (100.58/61.78)	LLWGSEKTSPimkLSFLSrrprvvGTHMDFIAGVLDGHILL....GCDPGTWKAYVSCFVFLVV.KFVPTWLRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.41|      15|     928|       8|      23|       6
---------------------------------------------------------------------------
    8-   23 (22.30/16.29)	RGDPPLLrAVEISRLV
  938-  952 (29.11/16.74)	RGVPPML.PLPMAALV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.36|      37|     442|     425|     468|       9
---------------------------------------------------------------------------
  425-  468 (54.20/49.09)	SLQDLVQYSgllvpPSSLVNVANAAAskAAIFRANCKVVGGN....PS
  869-  909 (61.16/37.05)	SLRDLVDFL.....PASLAAIVSYFS..AEITRGIWKAVPMNgtewPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23982 with Med33 domain of Kingdom Viridiplantae
Unable to open file!