<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23979

Description Uncharacterized protein
SequenceMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVAAALMPLCEAFGSMPPPSNHRSTIVDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSTGSFDEVPTQPIYIDSFPKLRAWYIQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEFLEAVPYVLEAVLTACYHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALHSIEDEVKEILASAGVQIHSCYPRTACFLFLCINLVALVHTMCDSLQVFSIIVAENLHQYLYYSVLIENFHFTLAGGVPPMLPLPMAALVSLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSSGSDITASRGVGALMGESITGHQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVIDCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPIMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHDLALSLLERGGPKTISAVVETLLQ
Length763
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.09
Grand average of hydropathy0.252
Instability index49.45
Isoelectric point6.74
Molecular weight82983.19
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23979
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.41|      21|      78|     441|     465|       1
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  441-  463 (38.85/20.40)	GSSWPSMPiiGALWTQKVRRWHD
  522-  542 (38.56/15.42)	GLHFPMAP..GFIYLRTCRTFHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.43|      17|      78|     140|     156|       2
---------------------------------------------------------------------------
  140-  156 (30.66/18.76)	SSATSTN.SGSSTGSFDE
  220-  237 (24.77/13.63)	SSASSSSvSGSSLSTSDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     316.30|     100|     254|      30|     132|       3
---------------------------------------------------------------------------
   30-   96 (93.87/63.55)	.....................................................LNAIllgVSYVDAV.HIFSLYG....MVPDVAAALMPL.CEAFGSMPPPSNH..RSTIVDETSVYSVFSC.AFLC..L
   97-  132 (34.50/15.00)	LRLWKFYKPPQ.......EYCLAGRGGSV....RLELTLDYLVLMHN....................................................................................
  244-  357 (133.65/83.59)	LPAWEFLEAVPyvleavlTACYHGRISSR....DMTTSLRDLV....dflpasLAAI...VSYFSAE.ITRGIWK....AVP.MNGTEWPSpGAALHSIEDEVKEilASAGVQIHSCYPRTACfLFLCinL
  358-  418 (54.28/29.34)	VAL......VH.......TMCDSLQVFSIivaeNLHQYLYYSVLIEN....................fH.FTLAGgvppMLPLPMAALVSL.TITF...................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.97|      15|     254|     424|     438|       5
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  424-  438 (28.75/18.11)	LDYIHGII.GQALENC
  679-  694 (24.22/14.18)	MDFIAGVLdGHILLGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.78|      17|      44|     603|     621|       7
---------------------------------------------------------------------------
  603-  621 (25.24/20.86)	GPLLVQvlYEETLPTLLLS
  650-  666 (31.54/19.56)	GSLLWG..SEKTSPIMKLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23979 with Med33 domain of Kingdom Viridiplantae
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