<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23978

Description Uncharacterized protein
SequenceMLLALIPLAIAAILKEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANAAASKAAIFRANCKVVGGNPSMIGQSDSSTKAVGNMLHLIVEACISRNLIDTTAYLWPGYVVLPGHSKDTSLPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVAAALMPLCEAFGSMPPPSNHRSTIVDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSTGSFDEVPTQPIYIDSFPKLRAWYIQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEFLEAVPYVLEAVLTACYHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALHSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSSGSDITASRGVGALMGESITGHQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVIDCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPIMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHDLALSLLERGGPKTISAVVETLLQ
Length916
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.08
Grand average of hydropathy0.194
Instability index48.96
Isoelectric point7.28
Molecular weight98623.95
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23978
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     775.88|     156|     157|     369|     524|       1
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   67-  212 (128.70/51.52)	A.IFRANCK...VVGGNPSmigqSDSST..............................KAVGNMLHLIVEACISRNLI..DTTAYLWPgyvvlpghskdtslpqespwvnfmqgapLSDPL...KNALIATPASSVAELDK.LYH.IALNGSE.............................................................qeksaaakIV.CGASLVRGW.NIQEHVVRMVVKLLS
  213-  334 (129.82/52.02)	....PPLP......................SDSSLQGSM..SHYlsQKSTLNA...ILLGVSYV.DAVHI.............FSLYG............................MVPDV...AAALMPLCEAFGSMPPPSNHRSTIVDET.................................svysvfscAFlCL.....L.RLWkfYKPP........QEyCLA....GR.GGSVRLELTLDYLVL
  335-  408 (109.18/42.76)	......MHNS.RIEFPN.S....SATSTN.SGSSTGSFD..EV.....PTQP.................................................................................................................................iyID........SF.PK.....L.RAW..YIQN........QA.CIASTLSGL.GNTNPVHQVANKILS
  409-  566 (238.76/100.89)	M.ICRKMTKS.GVVSGNLS....SASSSSVSGSSLSTSD..DSY..QRPTLPAW.EFLEAVPYVLEAVLTACYHGRISSRDMTTSLRD............................LVDFL...PASLAAIVSYFSAEITRGIWKAVPMNGTEWP.SPG......................aaLH........SI.EDevkeiL.ASA..GVQI........HS.CYP...RGV.PPMLPLPMAA..LVS
  567-  749 (169.41/69.77)	LtITFKLDRSlDYIHGIIG....QALENCAGGSSWPSMPiiGAL..WTQKVRRWhDFI.....VLSCIRSP..FGR..DKDAVAQLIQ..........................scFSSFLrssPSSGSDITASRGVGALMG.ESITGHQGLHFPmAPGfiylrtcrtfhdtyfvsemilrqvID........CS.HK.....LaNGW..SSNG........PP.HLKSGRPPLsGAASMASQVAMLGAG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.03|      43|      44|     765|     807|       3
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  756-  802 (68.58/47.20)	GPLLVqvlyEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFC
  803-  847 (71.45/49.53)	GSLLW..gsEKTSPIMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23978 with Med33 domain of Kingdom Viridiplantae
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