<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23976

Description Uncharacterized protein
SequenceRITKSIDAALQLSKSYGVSGTDFGHVVILFVLIVITKLIDSVLEDCGISSGMTQDQESVYPIEGPQPMDMDVKGVSAVKQNEQREQLRRRNIVMALEVLHIMAADTKIQAFLRLICLNMPDKFSVLSQRLTLIEAHKMALERLLPTSHKIDDLVMYIWRVSNLDYQPNNKRLVGVLGNLRSSNSMLGQLTGAGRAACWIIFDIYMENAMDGRHLGGISAIEIIKEMSKTAQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDTRLCMLLALIPLAIAAILKEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANAAASKAAIFRANCKVVGGNPSMIGQSDSSTKAVGNMLHLIVEACISRNLIDTTAYLWPGYVVLPGHSKDTSLPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVAAALMPLCEAFGSMPPPSNHRSTIVDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSTGSFDEVPTQPIYIDSFPKLRAWYIQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEFLEAVPYVLEAVLTACYHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALHSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSSGSDITASRGVGALMGESITGHQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVIDCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPIMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHDLALSLLERGGPKTISAVVETLLQ
Length1188
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy0.154
Instability index49.84
Isoelectric point7.38
Molecular weight129093.16
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23976
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     368.26|     125|     164|     140|     303|       1
---------------------------------------------------------------------------
   95-  168 (28.32/37.62)	............................................................................................ALEVLH.......IMAADTKIQAFLRLICLNMPdkfSVLSQRLTL......IEAHK....malerllptshkiddlvmyiwrVSNLD.........YQPN
  169-  325 (178.06/153.12)	NKRLVGvlGNlrssNSMLGQlTGAGRAACWIIFDIYMENAMdGRHLGGISA.....IEIIKEMSKTAQAINEASWQETFkalwisalrlvQRAREPLEGP.....IPHLDTRLCMLLALIPLAIA...AILKEETDA....CGAEGNKSLPR..................rlglVSSLQdlvqysgllVPPS
  344-  467 (161.88/95.93)	NCKVVG..GN....PSMIGQ.SDSSTKAVGNMLHLIVEACI.SRNLIDTTAylwpgYVVLPGHSKDTSLPQESPWVNFM...........QGA..PLSDPlknalIATPASSVAELDKLYHIALN...GSEQEKSAAakivCGA....SLVR........................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     206.43|      61|     164|     905|     992|       2
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  861-  902 (50.25/13.63)	.........................ENCAG..GSSWPSMPiiGALWTQKVRRWHD..FIVLSCIRSPFgrD
  917-  981 (96.44/87.01)	FLRSS..PSSGSDITASRgVgALMGESITGHQGLHFPMAP..GFIYLRTCRTFHDtyFVSEMILRQVI..D
  997- 1043 (59.74/19.10)	HLKSGrpPLSGAASMASQ.V.AMLGAGLLCVAG..GPLLV..QVLYEETLPTL..................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     210.64|      70|      71|     580|     650|       3
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  558-  606 (51.61/31.89)	...........................DETSVYSVFSCAF.lCLLRLWkfYKPPQEyCLA....GRGGSVRLELTLDYLVL
  607-  680 (122.96/75.43)	MHNSRIEFPN.SSATSTN.SGSSTGSFDEVPTQPIYIDSF..PKLRAW..YIQNQA.CIAstlsGLGNTNPVHQVANKILS
  686-  724 (36.08/16.38)	MTKSGVVSGNlSSASSSSvSGSSLSTSD.........DSYqrPTLPAW.................................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23976 with Med33 domain of Kingdom Viridiplantae
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