<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23970

Description Uncharacterized protein
SequenceMGAAEAPALAAAPAAGGGVGGEPLERRVMAAVKASEARGDPPLLRAVEISRLVAGEPGAGVPSADLAGILVSNLCFAHNSPSLWKLLDQAMSSRLLCPLHVLALLTARVLPQRRAQPEAYRLYLELLKGNVTSSSLSLLAGSNRDKITKSIDAALQLSKSYGVSGTDFGHVVILFVLIVITKLIDSVLEDCGISSGMTQDQESVYPIEGPQPMDMDVKGVSAVKQNEQREQLRRRNIVMALEVLHIMAADTKIQAFLRLICLNMPDKFSVLSQRLTLIEAHKMALERLLPTSHKIDDLVMYIWRVSNLDYQPNNKRLVGVLGNLRSSNSMLGQLTGAGRAACWIIFDIYMENAMDGRHLGGISAIEIIKEMSKTAQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDTRLCMLLALIPLAIAAILKEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANAAASKAAIFRANCKVVGGNPSMIGQSDSSTKSVGNMLHLIVEACISRNLIDTTAYLWPGYVVLPGHSKDTSLPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVAAALMPLCEAFGSMPPPSNHRSTIVDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSTGSFDEVPTQPIYIDSFPKLRAWYIQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEFLEAVPYVLEAVLTACYHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALHSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSSGSDITASRGVGALMGESITGHQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVIDCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPIMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHDLALSLLERGGPKTISAVVETLLQ
Length1333
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy0.160
Instability index50.05
Isoelectric point7.72
Molecular weight144019.30
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23970
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     338.78|     107|     231|     774|     888|       1
---------------------------------------------------------------------------
  774-  888 (167.93/134.26)	GSfdEVPTQPIyIDSF..PKLRAWY.IQNQACIASTLSglGNTNPVHQVANKILSMICRKMTKSGvvSGNLSSASSSSVSGSSLsTSDDSYQRPTLPAWEFLEA......VPYVLEAVLTA...CYH
 1011- 1129 (170.85/109.99)	GS..SWPSMPI.IGALwtQKVRRWHdFIVLSCIRSPFG..RDKDAVAQLIQSCFSSFLRSSPSSG..SDITASRGVGALMGESI.TGHQGLHFPMAPGFIYLRTcrtfhdTYFVSEMILRQvidCSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     200.13|      53|     228|      71|     125|       2
---------------------------------------------------------------------------
   71-  125 (84.99/55.36)	VSNLCFAHNSPSLWKLLDQAMSSRLLCpLHVLALLTArVLPQRRAQPEAYRLYLE
  258-  286 (34.56/14.82)	.......................RLIC.LNMPDKFS..VLSQRLTLIEAHKMALE
  305-  351 (80.57/44.09)	VSNLDYQPNNKRLVGVLGNLRSSN.....SMLGQLTG...AGRAACWIIFDIYME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.45|      19|     230|     369|     411|       3
---------------------------------------------------------------------------
   44-   62 (34.77/ 9.63)	LRAVEIS..RLV..AGEPGAG.VP
  387-  410 (22.68/ 6.11)	FKALWISalRLVqrAREPLEGpIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.74|      46|     161|     422|     469|       6
---------------------------------------------------------------------------
  422-  469 (70.47/44.41)	LIPLAIAAILKEETDA....CGAEGNKSLPRRLGLVSSLQDLVqySGLLVPP
  542-  567 (36.47/16.52)	.....................GHSKDTSLPQESPWVNFMQ.....GAPLSDP
  586-  631 (66.80/36.09)	LYHIALNGSEQEKSAAakivCGA....SLVRGWNIQEHVVRMV..VKLLSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.56|      60|    1099|     126|     190|       7
---------------------------------------------------------------------------
  126-  190 (86.98/69.67)	LLKGNVTSSS...LSLLA......GSNRDKITKSIDAALQLsksyGVSGTDFGHVVILFVLIVItKLIDSVLED
 1222- 1290 (100.58/65.61)	LLWGSEKTSPimkLSFLSrrprvvGTHMDFIAGVLDGHILL....GCDPGTWKAYVSCFVFLVV.KFVPTWLRD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23970 with Med33 domain of Kingdom Viridiplantae
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