<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23963

Description Uncharacterized protein
SequenceSREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESASFSSPGSLQSSLQSWSSSMLESLRPSPLANPVVAPASPCAPVPIISMDVDSITAFLMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRSSSPGALHSSINSIRSFLSMSDIVPHGKIGTMLDCNSLQQQGGCNTVNKMKRVFNHTGSRSQSLPLGSMDGSCMSFECGASDSGSSSEVNFKRQKIQNASNEALLEEIKSINSTLIDTVLSISDYCGMDGIPRCDGGTTIKLSYSAVSLSPTFKSVFATSEACLVLPVKLFVPADYPRSSPVLRNDEGDEVPRKNSSAISALADVVFRHALDALLEPQSIEAMARAWDASVRKVVTRFARQQGGGTISSMFGGWKRCAAA
Length422
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.258
Instability index68.20
Isoelectric point6.97
Molecular weight44788.01
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23963
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.89|      25|      39|      66|      90|       1
---------------------------------------------------------------------------
   66-   90 (46.49/23.76)	PSPLANPV..VAPASPCAPVPIISMDV
  106-  132 (40.40/19.82)	PPPKANGSnqVTRTEPIVPASPLQADI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.26|      31|     204|     144|     212|       2
---------------------------------------------------------------------------
   25-   58 (53.35/11.39)	TP.HQQSNDNYLQGIESasfSSPGSLQSSLQSWSS
  147-  178 (51.91/70.01)	TPvTKRPIDRLMDAIRS...SSPGALHSSINSIRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.81|      25|      50|     286|     310|       3
---------------------------------------------------------------------------
  286-  310 (47.41/26.31)	DYCGMDGIPRCDGGTTI.KLSYSAVS
  337-  362 (39.40/20.82)	DYPRSSPVLRNDEGDEVpRKNSSAIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.64|      11|     198|     201|     212|       4
---------------------------------------------------------------------------
  201-  212 (17.25/16.64)	QQQGGcNTVNKM
  402-  412 (21.39/13.39)	RQQGG.GTISSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.69|      17|      43|     181|     197|       5
---------------------------------------------------------------------------
  181-  197 (32.74/18.46)	SMSDIVPHGKI.GTML..DC
  221-  240 (23.95/11.79)	SRSQSLPLGSMdGSCMsfEC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23963 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRS
2) SREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESASFSSPGSLQSS
97
1
163
52










Molecular Recognition Features






MoRF SequenceStartStop




1) PADARILQPR
7
16