<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23961

Description Uncharacterized protein
SequenceHWIEAETPDFRARMRRIYLPTKLATYFQPKYSPNSLEAQTLIARLEEDAFRGTNSKVEYVKKISDKVVTMLRNKTDELQRRAQLQSQLQQAIEAQALHGGSSSVMPEAVMVASRRPTSQSMAPQTSGLVPNQNMLHPCTSNMQIEVEKKHHGQDHYPNFQPMGITRAGPGVQSGAWPMQSGASQSESQYMARQPQATNFVGYSLASGSKPVIRPNSQHNHPLGQNDSAIGVRQPQITRLNEILRANQQEMGTQRYQMLGAQQADVSKMQPGQLRIRNNQEDARQTGFLHPPFKVSEPMTPPVQQIPGAQQSQIPAMMGSTREYDLEEIFCKIKSWKDAYFPQFLELDRRVVLPTLTEEQFSSLPEAKANLYIRKADFKKSIRRILNLMSLQKSDVHDGLKVDLPKYEKLIHHFLALLERNKTCHAKMNTGYQLQNCDEQRKAINLTGNASPITGGTREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESASFSSPGSLQSSLQSWSSSMLESLRPSPLANPVVAPASPCAPVPIISMDVDSITAFLMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRSSSPGALHSSINSIRSFLSMSDIVPHGKIGTMLDCNSLQQQGGCNTVNKMKRVFNHTGSRSQSLPLGSMDGSCMSFECGASDSGSSSEVNFKRQKIQNASNEALLEEIKSINSTLIDTVLSISDYCGMDGIPRCDGGTTIKLSYSAVSLSPTFKSVFATSEAVLWISEFRHLLHVTLQCTDCFSD
Length802
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.511
Instability index61.85
Isoelectric point8.72
Molecular weight88350.02
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23961
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.74|      33|      37|     217|     250|       1
---------------------------------------------------------------------------
  184-  215 (21.20/ 7.38)	.......QSESQYMARQPQATNFvgyslasgsKPVIRP.N...
  217-  249 (58.54/35.15)	QHNHPLGQNDSAIGVRQPQITRL.........NEILRA.NQQE
  253-  280 (41.99/19.03)	QRYQMLGAQQADVSKMQP...............GQLRIrNNQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.59|      28|      37|     504|     539|       2
---------------------------------------------------------------------------
  493-  520 (43.89/16.20)	IESASFSSPGSLQS.SLQSWSSSM.LE...SLR
  529-  560 (35.28/25.48)	VAPASPCAPVPIISmDVDSITAFL.MDdnaAAA
  619-  641 (26.41/ 7.70)	......SSPGALHS.SINSIRSFLsMS...DIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.95|      26|      41|     642|     669|       3
---------------------------------------------------------------------------
  642-  669 (42.31/25.84)	PHGKI.GTML..DCNSlQQQGGCNTVNkMKR
  682-  710 (39.64/17.39)	PLGSMdGSCMsfECGA.SDSGSSSEVN.FKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.40|      31|      37|      80|     115|       4
---------------------------------------------------------------------------
   38-   73 (44.10/27.53)	AQ...TLIARLEEDAFRGTNSKVeyvkkISDKVVTMLRN
   82-  115 (46.29/36.26)	AQlqsQLQQAIEAQALHGGSSSV.....MPEAVMVASRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.15|      25|      42|     717|     742|       5
---------------------------------------------------------------------------
  717-  742 (35.83/26.32)	SNEALLEEIKSINSTlIDTVLSISDY
  762-  786 (42.31/26.76)	SAVSLSPTFKSVFAT.SEAVLWISEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.01|      30|      31|     326|     355|       6
---------------------------------------------------------------------------
    2-   23 (27.17/12.02)	.........WIE......AETPDFRARMRRIY.LPTkL
  326-  355 (54.89/30.19)	EEIFCKIKSWKD......AYFPQFLELDRRVV.LPT.L
  357-  390 (31.96/15.16)	EEQFSSLPEAKAnlyirkADFKKSI...RRILnLMS.L
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.11|      21|     177|     281|     304|      12
---------------------------------------------------------------------------
  281-  304 (36.08/26.37)	DARqtgFLHPPFKVSEPMTPPVQQ
  464-  484 (39.03/20.74)	DAR...ILQPRQTTMARTTTPHQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23961 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AINLTGNASPITGGTREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESA
2) LMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRS
3) SKMQPGQLRIRNNQEDARQTGFLHPPFKVSEPMTPPVQQIPGAQQSQIPAMM
4) SVMPEAVMVASRRPTSQSMAPQTSGLVPNQNMLHPCTSNMQIEVEKKHHGQDHYPNFQPMGITRAGPGVQSGAWPMQSGASQSESQYMARQPQATNFVGYSLASGSKPVIRPNSQHNHPLGQNDSAIGVRQPQITRLNEILRANQQEMGTQRYQMLGAQQA
442
552
266
103
496
618
317
263










Molecular Recognition Features






MoRF SequenceStartStop




NANANA