<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23960

Description Uncharacterized protein
SequenceRPTKLATYFQPKYSPNSLEAQTLIARLEEDAFRGTNSKVEYVKKISDKVVTMLRNKTDELQRRAQLQSQLQQAIEAQALHGGSSSVMPEAVMVASRRPTSQSMAPQTSGLVPNQNMLHPCTSNMQIEVEKKHHGQDHYPNFQPMGITRAGPGVQSGAWPMQSGASQSESQYMARQPQATNFVGYSLASGSKPVIRPNSQHNHPLGQNDSAIGVRQPQITRLNEILRANQQEMGTQRYQMLGAQQADVSKMQPGQLRIRNNQEDARQTGFLHPPFKVSEPMTPPVQQIPGAQQSQIPAMMGSTREYDLEEIFCKIKSWKDAYFPQFLELDRRVVLPTLTEEQFSSLPEAKANLYIRKADFKKSIRRILNLMSLQKSDVHDGLKVDLPKYEKLIHHFLALLERNKTCHAKMNTGYQLQNCDEQRKAINLTGNASPITGGTSREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESASFSSPGSLQSSLQSWSSSMLESLRPSPLANPVVAPASPCAPVPIISMDVDSITAFLMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRSSSPGALHSSINSIRSFLSMSDIVPHGKIGTMLDCNSLQQQGGCNTVNKMKRVFNHTGSRSQSLPLGSMDGSCMSFECGASDSGSSSEVNFKRQKIQNASNEALLEEIKSINSTLIDTVLSISDYCGMDGIPRCDGGTTIKLSYSAVSLSPTFKSVFATSEACLVLPVKLFVPADYPRSSPVLRNDEGDEVPRKNSSAISALADVVFRHALDALLEPQSIEAMARAWDASVRKVVTRFARQQGGGTISSMFGGWKRCAAA
Length860
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.482
Instability index63.12
Isoelectric point9.02
Molecular weight94015.42
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23960
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.74|      33|      38|     199|     232|       1
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  166-  197 (21.20/ 6.52)	.......QSESQYMARQPQATNFvgyslasgsKPVIRP.N...
  199-  231 (58.54/31.33)	QHNHPLGQNDSAIGVRQPQITRL.........NEILRA.NQQE
  235-  262 (41.99/16.94)	QRYQMLGAQQADVSKMQP...............GQLRIrNNQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.59|      28|      37|     487|     522|       2
---------------------------------------------------------------------------
  476-  503 (43.89/15.57)	IESASFSSPGSLQS.SLQSWSSSM.LE...SLR
  512-  543 (35.28/24.50)	VAPASPCAPVPIISmDVDSITAFL.MDdnaAAA
  602-  624 (26.41/ 7.38)	......SSPGALHS.SINSIRSFLsMS...DIV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.62|      32|      37|      62|      97|       3
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   18-   55 (40.83/22.13)	LEAQtLIARLEEDAFRGTNSKVeyvkkISDKVVTMLRN
   66-   97 (52.79/26.06)	LQSQ.LQQAIEAQALHGGSSSV.....MPEAVMVASRR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.64|      11|     203|     639|     650|       4
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  639-  650 (17.25/13.56)	QQQGGcNTVNKM
  840-  850 (21.39/10.78)	RQQGG.GTISSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.92|      27|      31|     308|     337|       7
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  308-  337 (44.88/48.26)	EEIFCKIKSWKD......AYFPQFLeldRRVV.LPTL
  339-  372 (34.04/26.47)	EEQFSSLPEAKAnlyirkADFKKSI...RRILnLMSL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.81|      25|      50|     724|     748|       9
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  724-  748 (47.41/31.62)	DYCGMDGIPRCDGGTTI.KLSYSAVS
  775-  800 (39.40/24.99)	DYPRSSPVLRNDEGDEVpRKNSSAIS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.11|      21|     178|     263|     286|      11
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  263-  286 (36.08/27.10)	DARqtgFLHPPFKVSEPMTPPVQQ
  447-  467 (39.03/21.28)	DAR...ILQPRQTTMARTTTPHQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23960 with Med15 domain of Kingdom Viridiplantae
Unable to open file!