<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23958

Description Uncharacterized protein
SequenceHWIEAETPDFRARMRRIYLPTKLATYFQPKYSPNSLEAQTLIARLEEDAFRGTNSKVEYVKKISDKVVTMLRNKTDELQRRAQLQSQLQQAIEAQALHGGSSSVMPEAVMVASRRPTSQSMAPQTSGLVPNQNMLHPCTSNMQIEVEKKHHGQDHYPNFQPMGITRAGPGVQSGAWPMQSGASQSESQYMARQPQATNFVGYSLASGSKPVIRPNSQHNHPLGQNDSAIGVRQPQITRLNEILRANQQEMGTQRYQMLGAQQADVSKMQPGQLRIRNNQEDARQTGFLHPPFKVSEPMTPPVQQIPGAQQSQIPAMMGSTREYDLEEIFCKIKSWKDAYFPQFLELDRRVVLPTLTEEQFSSLPEAKANLYIRKADFKKSIRRILNLMSLQKSDVHDGLKVDLPKYEKLIHHFLALLERNKTCHAKMNTGYQLQNCDEQRKAINLTGNASPITGGTREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESASFSSPGSLQSSLQSWSSSMLESLRPSPLANPVVAPASPCAPVPIISMDVDSITAFLMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRSSSPGALHSSINSIRSFLSMSDIVPHGKIGTMLDCNSLQQQGGCNTVNKMKRVFNHTGSRSQSLPLGSMDGSCMSFECGASDSGSSSEVNFKRQKIQNASNEALLEEIKSINSTLIDTVLSISDYCGMDGIPRCDGGTTIKLSYSAVSLSPTFKSVFATSEACLVLPVKLFVPADYPRSSPVLRNDEGDEVPRKNSSAISALADVVFRHALDALLEPQSIEAMARAWDASVRKVVTRFARQQGGGTISSMFGGWKRCAAA
Length877
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.484
Instability index62.73
Isoelectric point9.01
Molecular weight96214.96
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23958
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.74|      33|      37|     217|     250|       1
---------------------------------------------------------------------------
  184-  215 (21.20/ 6.66)	.......QSESQYMARQPQATNFvgyslasgsKPVIRP.N...
  217-  249 (58.54/32.33)	QHNHPLGQNDSAIGVRQPQITRL.........NEILRA.NQQE
  253-  280 (41.99/17.44)	QRYQMLGAQQADVSKMQP...............GQLRIrNNQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.59|      28|      37|     504|     539|       2
---------------------------------------------------------------------------
  493-  520 (43.89/16.81)	IESASFSSPGSLQS.SLQSWSSSM.LE...SLR
  529-  560 (35.28/26.39)	VAPASPCAPVPIISmDVDSITAFL.MDdnaAAA
  619-  641 (26.41/ 8.03)	......SSPGALHS.SINSIRSFLsMS...DIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.40|      31|      37|      80|     115|       3
---------------------------------------------------------------------------
   38-   73 (44.10/25.29)	AQ...TLIARLEEDAFRGTNSKVeyvkkISDKVVTMLRN
   82-  115 (46.29/33.28)	AQlqsQLQQAIEAQALHGGSSSV.....MPEAVMVASRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.95|      26|      40|     642|     669|       4
---------------------------------------------------------------------------
  642-  669 (42.31/32.65)	PHGKI.GTML..DCNSlQQQGGCNTVNkMKR
  682-  710 (39.64/22.01)	PLGSMdGSCMsfECGA.SDSGSSSEVN.FKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.81|      25|      49|     741|     765|       5
---------------------------------------------------------------------------
  741-  765 (47.41/24.50)	DYCGMDGIPRCDGGTTI.KLSYSAVS
  792-  817 (39.40/19.36)	DYPRSSPVLRNDEGDEVpRKNSSAIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.01|      30|      31|     326|     355|       6
---------------------------------------------------------------------------
    2-   23 (27.17/14.37)	.........WIE......AETPDFRARMRRIY.LPTkL
  326-  355 (54.89/36.13)	EEIFCKIKSWKD......AYFPQFLELDRRVV.LPT.L
  357-  390 (31.96/18.13)	EEQFSSLPEAKAnlyirkADFKKSI...RRILnLMS.L
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23958 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AINLTGNASPITGGTREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESA
2) LMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRS
3) SKMQPGQLRIRNNQEDARQTGFLHPPFKVSEPMTPPVQQIPGAQQSQIPAMM
4) SVMPEAVMVASRRPTSQSMAPQTSGLVPNQNMLHPCTSNMQIEVEKKHHGQDHYPNFQPMGITRAGPGVQSGAWPMQSGASQSESQYMARQPQATNFVGYSLASGSKPVIRPNSQHNHPLGQNDSAIGVRQPQITRLNEILRANQQEMGTQRYQMLGAQQA
442
552
266
103
496
618
317
263










Molecular Recognition Features






MoRF SequenceStartStop




NANANA