<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23957

Description Uncharacterized protein
SequenceRVEYVKKISDKVVTMLRNKTDELQRRAQLQSQLQQAIEAQALHGGSSSVMPEAVMVASRRPTSQSMAPQTSGLVPNQNMLHPCTSNMQIEVEKKHHGQDHYPNFQPMGITRAGPGVQSGAWPMQSGASQSESQYMARQPQATNFVGYSLASGSKPVIRPNSQHNHPLGQNDSAIGVRQPQITRLNEILRANQQEMGTQRYQMLGAQQADVSKMQPGQLRIRNNQEDARQTGFLHPPFKVSEPMTPPVQQIPGAQQSQIPVTVSDISAMMGSTREYDLEEIFCKIKSWKDAYFPQFLELDRRVVLPTLTEEQFSSLPEAKANLYIRKADFKKSIRRILNLMSLQKSDVHDGLKVDLPKYEKLIHHFLALLERNKTCHAKMNTGYQLQNCDEQRKAINLTGNASPITGGTSREQKQPADARILQPRQTTMARTTTPHQQSNDNYLQGIESASFSSPGSLQSSLQSWSSSMLESLRPSPLANPVVAPASPCAPVPIISMDVDSITAFLMDDNAAAAPPPKANGSNQVTRTEPIVPASPLQADIAAGHGEVQARGGDGTPVTKRPIDRLMDAIRSSSPGALHSSINSIRSFLSMSDIVPHGKIGTMLDCNSLQQQGGCNTVNKMKRVFNHTGSRSQSLPLGSMDGSCMSFECGASDSGSSSEVNFKRQKIQNASNEALLEEIKSINSTLIDTVLSISDYCGMDGIPRCDGGTTIKLSYSAVSLSPTFKSVFATSEACLVLPVKLFVPADYPRSSPVLRNDEGDEVPRKNSSAISALADVVFRHALDALLEPQSIEAMARAWDASVRKVVTRFARQQGGGTISSMFGGWKRCAAA
Length830
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.456
Instability index63.91
Isoelectric point8.93
Molecular weight90548.57
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23957
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     259.81|      95|     199|     290|     488|       1
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  290-  321 (18.03/188.23)	AYFPqFLELDRRVVLPTLTEEQFSSLPEAKAN....................................................................................................................................................
  400-  466 (89.86/69.65)	................................lyirkadfkksirrilnlmslqksdvhdglkvdlpkyeklihhflallernktchakmntgyqlqncdeqrkainltgNASPITGGTSREQKQPADARILQPRQTTMARTT..TP.HQQSNDNYLQGIESasfSSPGSLQSSLQSWSS
  489-  586 (151.92/ 0.00)	APVP.IISMDVDSITAFLMDDNAAAAPPPKAN..............................................................................GSNQVTRTEPIVPASPLQADIAAGHGEVQARGGdgTPvTKRPIDRLMDAIRS...SSPGALHSSINSIRS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.17|      32|      35|      88|     122|       3
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   88-  122 (57.01/41.41)	QievEKKHHGQDHYPNFQPMGITRAGPGVQSGAWP
  124-  155 (55.16/32.77)	Q...SGASQSESQYMARQPQATNFVGYSLASGSKP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.47|      27|      35|     162|     195|       4
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  162-  194 (42.44/44.80)	QHNHPLGQNDSAIGVRQPqitrlnEILRA.NQQE
  198-  225 (44.04/25.90)	QRYQMLGAQQADVSKMQP......GQLRIrNNQE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.64|      11|     198|     609|     620|       5
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  609-  620 (17.25/14.08)	QQQGGcNTVNKM
  810-  820 (21.39/11.19)	RQQGG.GTISSM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.81|      25|      50|     694|     718|       6
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  694-  718 (47.41/30.98)	DYCGMDGIPRCDGGTTI.KLSYSAVS
  745-  770 (39.40/24.48)	DYPRSSPVLRNDEGDEVpRKNSSAIS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.69|      17|      40|     589|     605|      10
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  589-  605 (32.74/21.33)	SMSDIVPHGKI.GTML..DC
  629-  648 (23.95/13.52)	SRSQSLPLGSMdGSCMsfEC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23957 with Med15 domain of Kingdom Viridiplantae
Unable to open file!