<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23955

Description Uncharacterized protein
SequenceDWRAQLQPEARGRIVDKIMDTLKNHLPVSVSLAPEALSELKKIAARFEEKVYTEATSQYDYLRKISVKLLSMETQRQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQIQQQFQPPPAGHAGAGDWQEEIYQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQFQPPAG
Length647
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.831
Instability index64.44
Isoelectric point9.46
Molecular weight74062.09
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23955
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     775.74|     116|     116|     414|     529|       1
---------------------------------------------------------------------------
  170-  231 (96.28/22.99)	....................GYAA.....Q...RQMAGRQQQQQ.SQQL..IYH......QH......QQ.................PSLQ.......SQQP....NIP.LQQQQQQLMGQQPNLQQNQlIGQQ...
  257-  324 (112.36/27.89)	.................................HQM...LNQQY.IP....LYQ.............PQQLGSQ........ANM..SSLQQHQ..QNQQQQQLFGTVPNVSS.MQWMHMQQRKAQQPQ..QQHAQQ
  325-  393 (107.14/26.30)	PP.......................mG.......LM....QPQFqHNQLQ........QLQH...LM.PQFQSQPNQ........LQEQLRMQQ......QSSMQQRLQTSG....AMLLQQNNMDQ....QNQFIQ
  394-  527 (225.05/62.26)	APrglqevssstsadstaqtGHASA.GDWQEEIHQMIKRLKDQY.FAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQ.IQQQFQP
  528-  644 (234.91/65.26)	PP.................aGHAGA.GDWQEEIYQMIKRLKDQY.FAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQ.IHQQFQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     110.59|      20|      20|     118|     137|       3
---------------------------------------------------------------------------
   76-   95 (28.02/12.26)	RQQAAGNAQLIPNQNNPAPG
   96-  114 (24.28/ 9.48)	LHPQGSNQAQTSAVPLMSQ.
  118-  137 (31.02/14.50)	RQPNASTSVQASSLTNIRQN
  139-  156 (27.27/11.71)	PGVNQTSTMQTASV..IPQN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23955 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEE
2) QQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLL
3) RQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQ
4) SSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQ
383
340
76
302
424
380
231
338










Molecular Recognition Features






MoRF SequenceStartStop




1) IISIL
623
627