<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23953

Description Uncharacterized protein
SequenceDWRAQLQPEARGRIVDKIMDTLKNHLPVSVSLAPEALSELKKIAARFEEKVYTEATSQYDYLRKISVKLLSMETQRQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIYQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQFQPPAG
Length530
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.878
Instability index67.08
Isoelectric point9.44
Molecular weight60405.34
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23953
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     638.42|     124|     126|     164|     289|       1
---------------------------------------------------------------------------
   54-  160 (132.18/34.22)	E..ATSQYDYL......R...KISvkllsmetQRQQAAGNAQL..IPNQnnpapglHPQGSNQAQTSAVPLMS.QQ.Q...AR...QPNAST....SVQASSLT......NIRQ........NLPGV....NQTSTMQTASVIP.........Q...NTM.....NN
  164-  289 (220.08/67.26)	Q..GTSQDGYAA....QR...QMA........GRQQQQQSQQL..IYHQ.......HQQPSLQSQQPNIPLQQ.QQ.QQLMGQ...QPNLQQNQLIGQQNGAVM......MQQQQRLAVQSNNLLNV....QQTHQMLNQQYIPLYQPQQLgSQANmSSLQQHQQNQ
  293-  405 (157.63/42.53)	QlfGTVPNVSSM....QW..mHMQ........QRKAQQPQQQ.....HA........QQPPMGLMQPQFQHNQlQQlQHLMPQfqsQPNQLQEQLRMQQQSSM..........QQRL..............QTSGAMLLQQN.NMDQQNQF.IQAP.RGLQEVSSST
  408-  526 (128.54/33.03)	D..STAQTGHASagdwQEeiyQMI........KRLKDQYFAELseLFNK........MCVKLQHVDSIIP.................PQISSEQYDKMKSFKIMlerilqMLQIGKSSVQPSMMDNVpryeKQIISILNSQRKPV.QPQ............IHQQFQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23953 with Med15 domain of Kingdom Viridiplantae
Unable to open file!