<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23950

Description Uncharacterized protein
SequenceLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQIQQQFQPPPGHAGAGDWQEEIYQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQFQPPADGIQHVPAPPTTNFSGPKQQNGASI
Length575
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.872
Instability index68.59
Isoelectric point9.47
Molecular weight65805.65
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23950
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     667.38|     114|     114|     320|     433|       1
---------------------------------------------------------------------------
  123-  228 (118.95/36.65)	QQP......nlqqnqligqqngAVMMQQQQrlavqsnnllnvQQTHQM...LNQ......QY.I....PLYQP.....QQLGS..QANMSS................LQQHQ..QNQQQQQLFGTVPNVSSmQWMHM..QQRKAQQPQQQHAQ
  229-  296 (98.03/28.89)	QPP...................................................mglmqpQFqHNQLQ........QLQH...LMP.QFQSQPNQ........LQEQLRMQQ..QSSMQQRLQTSG.........AMLLQQNNMDQ...QNQF
  298-  430 (220.79/74.43)	QAPrglqevssstsadstaqtgHASAGDWQ............EEIHQMIKRLKD......QY.FAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEK.QIISILNSQRKPVQPQIQQQF
  431-  546 (229.62/77.71)	QPP.................pgHAGAGDWQ............EEIYQMIKRLKD......QY.FAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEK.QIISILNSQRKPVQPQIHQQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.91|      21|      25|      88|     108|       2
---------------------------------------------------------------------------
   20-   40 (28.26/ 8.42)	QQARQPNASTSV.....QASSLTNIR
   69-   87 (29.45/ 9.14)	QGTSQDGYAAQR.....QMAG..RQQ
   88-  108 (39.80/15.43)	QQQSQQLIYHQH.....QQPSLQSQQ
  114-  136 (25.40/ 6.68)	QQQQQQLM...GqqpnlQQNQLIGQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23950 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQ
2) NNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEE
3) QQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLL
4) SSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQ
5) VQPQIHQQFQPPADGIQHVPAPPTTNFSGPKQQNGASI
1
288
245
207
538
136
329
285
243
575










Molecular Recognition Features






MoRF SequenceStartStop




NANANA