<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23947

Description Uncharacterized protein
SequencePNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQFQPPAG
Length232
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.876
Instability index74.39
Isoelectric point9.11
Molecular weight26971.45
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23947
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.08|      32|      51|       1|      43|       1
---------------------------------------------------------------------------
    1-   36 (56.04/19.14)	PNVSSMQwMHMQQrkaQQPQQQHAQQPPMGLMQPQF
   55-   86 (54.05/16.04)	PNQLQEQ.LRMQQ...QSSMQQRLQTSGAMLLQQNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.74|      15|     110|      40|      54|       2
---------------------------------------------------------------------------
   40-   54 (27.68/12.20)	QLQQLQHLM.PQFQSQ
  152-  167 (19.06/ 6.49)	KLQHVDSIIpPQISSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23947 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEE
2) PNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQ
85
1
126
83










Molecular Recognition Features






MoRF SequenceStartStop




1) YEKQIISILN
204
213