<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23944

Description Uncharacterized protein
SequenceLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQFQPPADGIQHVPAPPTTNFSGPKQQNGASI
Length459
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.935
Instability index73.25
Isoelectric point9.46
Molecular weight52193.95
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23944
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     603.40|     124|     126|      69|     194|       1
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    2-   94 (136.53/27.70)	....HPQGSNQAQTSAVPLMS.QQ.Q...AR...QPNAST....SVQASSLT......NIRQ........NLPGV....NQTSTMQTASVIP.........Q...NTM.....NNdlaQ..GTSQDGYAAQ.......R.QMAGRQQQQQSQQL
   95-  225 (196.60/47.15)	IYHQHQQPSLQSQQPNIPLQQ.QQ.QQLMGQ...QPNLQQNQLIGQQNGAVM......MQQQQRLAVQSNNLLNV....QQTHQMLNQQYIPLYQPQQLgSQANmSSLQQHQQNQqqqQlfGTVPNVSSMQ.......WmHMQQRKAQQPQQQ.
  226-  345 (146.37/30.31)	..HA.QQPPMGLMQPQFQHNQlQQlQHLMPQfqsQPNQLQEQLRMQQQSSM..........QQRL..............QTSGAMLLQQN.NMDQQNQF.IQAP.RGLQEVSSST.saD..STAQTGHASAgdwqeeiH.QMIKRLKDQYFAEL
  348-  454 (123.90/24.35)	LFNK.MCVKLQHVDSIIP.................PQISSEQYDKMKSFKIMlerilqMLQIGKSSVQPSMMDNVpryeKQIISILNSQRKPV.QPQ............IHQQFQppaD..GIQHVPAPPT.......T.NFSGPKQQ......
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23944 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQ
2) NNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEE
3) QQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLL
4) SSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQ
5) VQPQIHQQFQPPADGIQHVPAPPTTNFSGPKQQNGASI
1
288
245
207
422
136
329
285
243
459










Molecular Recognition Features






MoRF SequenceStartStop




1) QIISILN
410
416