<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23941

Description Uncharacterized protein
SequenceAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQIQQQFQPPPGHAGAGDWQEEIYQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQFQPPAG
Length564
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.875
Instability index69.30
Isoelectric point9.48
Molecular weight64634.39
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23941
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     644.51|     114|     114|     333|     446|       1
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  120-  228 (104.65/28.33)	Q....QPNIplqqqQQQLmgQQP......nlqqnqligqqngAVMMQQQQrlavqsnnllnvQQTHQM...LNQ......QY.I....PLYQP.....QQLGS..QANMSS................LQQHQ..QNQQQQQLFGTVPNVSSmQWMHM..Q
  229-  299 (103.10/27.80)	QRKAQQPQQ.....QHAQ..QPP...................................................mglmqpQFqHNQLQ........QLQH...LMP.QFQSQPNQ........LQEQLRMQQ..QSSMQQRLQTSG.........AMLLQ
  300-  430 (206.44/62.64)	QNNMDQ........QNQF.iQAPrglqevssstsadstaqtgHASAGDWQ............EEIHQMIKRLKD......QY.FAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEK.QIISILNS
  431-  546 (230.32/70.69)	QRKPVQPQI.....QQQF..QPP.................pgHAGAGDWQ............EEIYQMIKRLKD......QY.FAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEK.QIISILNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.08|      31|      65|       1|      37|       2
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    1-   31 (46.10/20.53)	.........AQLIPNQNNPAPGLhPQGSNQAQTSAVPLMS
   37-   65 (19.06/ 7.70)	QpnastsvqASSLTNIRQNLPGV.....NQTSTM......
   66-   96 (45.92/14.37)	Q.......tASVIP.QNTMNNDL.AQGTSQDGYAAQRQMA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23941 with Med15 domain of Kingdom Viridiplantae
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