<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23940

Description Uncharacterized protein
SequenceKISVKLLSMETQRQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQIQQQFQPPPGHAGAGDWQEEIYQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQFQPPAG
Length583
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.865
Instability index67.41
Isoelectric point9.58
Molecular weight66718.79
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23940
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     667.90|     115|     115|     351|     465|       1
---------------------------------------------------------------------------
  139-  247 (108.02/33.61)	Q....QPNIplqqqQQQLmgQQP......nlqqnqligqqnGAVMMQQQQrlavqsnnllnvQQTHQM....LNQQYI....PLYQP.....QQLGS..QANMSS................LQQHQ..QNQQQQQLFGTVPNVSSmQWMHM..Q
  248-  318 (118.93/37.78)	QRKAQQPQQ.....QHAQ..QPP...............................................mGLMQPQFQH.....NQ....LQQLQHLM.PQFQSQPNQ........LQEQLRMQQ..QSSMQQRLQTSG.........AMLLQ
  319-  449 (208.53/72.01)	QNNMDQ........QNQF.iQAPrglqevssstsadstaqtGHASAGDWQ............EEIHQMIK.RLKDQYFAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEK.QIISILNS
  450-  565 (232.42/81.13)	QRKPVQPQI.....QQQF..QPP.................pGHAGAGDWQ............EEIYQMIK.RLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEK.QIISILNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.27|      36|      65|      20|      56|       2
---------------------------------------------------------------------------
    4-   33 (29.32/ 7.72)	...........VKLLSMETQRQ...qaagnAQLIPNQNNPAPGL
   35-   78 (52.05/22.20)	PQGSNQAQTSAVPLMSQQQARQpnastsvqASSLTNIRQNLPGV
  100-  136 (54.91/20.08)	AQGTSQDGYAAQRQMAGRQQQQ......qsQQLIYHQHQQ.PSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23940 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISVKLLSMETQRQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQ
2) NNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEE
3) QQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLL
4) SSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQ
2
320
277
239
168
361
317
275










Molecular Recognition Features






MoRF SequenceStartStop




1) IISIL
559
563