<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23938

Description Uncharacterized protein
SequenceVLTQICHGTASDHLGQTILFVLFLHIVHCACRMDTLKNHLPVSVSLAPEALSELKKIAARFEEKVYTEATSQYDYLRKISVKLLSMETQRQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQIQQQFQPPPGRRGRELTVVAEADAPGDQVGQDRAAVRVVRARVTGEGDDRASKARAIGS
Length593
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.777
Instability index60.84
Isoelectric point9.51
Molecular weight66957.74
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23938
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     600.65|     124|     126|     178|     303|       1
---------------------------------------------------------------------------
   68-  168 (105.62/24.76)	..................E..ATSQYDYL.........R.KISvkllsmetQRQQAAGNAQL..IPNQnnpapglHPQGSNQAQTSAVPLM...S.QQ.Q........AR...QPNAST....SVQASSLTNIRQ........NLPGVNQTSTMQTASVIP.......
  169-  287 (206.03/55.65)	.Q...NTM.....NNdlaQ..GTSQDGYAAQ.......R.QMA........GRQQQQQSQQL..IYHQ.......HQQPSLQSQQPNIPLQ...Q.QQ.QQL.....MGQ...QPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQL
  289-  405 (150.52/41.49)	SQANmSSLQQHQQNQqqqQlfGTVPNVSSMQ.......WmHMQ........QRKAQQPQQQ.....HA........QQPPMGLMQPQFQHN...QlQQlQHL.....MPQfqsQPNQLQEQLRMQQQSSM....QQRL..........QTSGAMLLQQN.NMDQQNQF
  406-  534 (138.49/33.73)	IQAP.RGLQEVSSST.saD..STAQTGHASAgdwqeeiH.QMI........KRLKDQYFAELseLFNK........VCVKLQHVDSIIPPQissE.QY.DRMksfkiMLE...R.ILQMMQ.IGK..SSV..QPAMRDKVPRYE....KQIISILNSQRKPV.QPQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.50|      14|      16|     553|     568|       2
---------------------------------------------------------------------------
  553-  568 (20.17/19.21)	VAEADAPGDqvGQDRA
  572-  585 (23.33/14.91)	VVRARVTGE..GDDRA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23938 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEE
2) QAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQ
3) QQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLL
4) SSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQ
5) VGQDRAAVRVVRARVTGEGDDRASKARAIGS
397
92
354
316
563
438
245
394
352
593










Molecular Recognition Features






MoRF SequenceStartStop




1) IISIL
2) SKARAIG
520
586
524
592