<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23937

Description Uncharacterized protein
SequenceQPEARGRIVDKIMDTLKNHLPVSVSLAPEALSELKKIAARFEEKVYTEATSQYDYLRKISVKLLSMETQRQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQIQQQFQPPPGHAGAGDWQEEIYQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQFQPPAG
Length640
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.832
Instability index64.23
Isoelectric point9.46
Molecular weight73221.16
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23937
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     715.21|     115|     115|     408|     522|       1
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   52-  115 (44.27/ 7.11)	........................................................QYDYLRkiSVKLLSMETQRQ.QAAGNAQLIPNQNNP........APGLHPQGSNqaqtsavPLM.........SQQQARQPN.........
  211-  320 (122.72/30.89)	..GQQPNLQQN..QLIGQ...QN.GAVMMQQQQRLAVQsnnLLNVQQ..THQMLNQQY.........IPLYQPQQLgSQANMSSLQQHQQNQqqqqlfgtVP.................NvssmqwmhmQQRKAQQPQQQHAQ.QPP
  325-  389 (85.83/19.71)	...................QPQFqHNQLQ........Q...LQH...LMP.QFQSQPNQ..........LQEQLRM.QQ..QSSMQQRLQTS........G........A.......MLL.........QQNNMDQ...QNQFiQAP
  408-  522 (231.09/63.74)	GHASAGDWQEEIHQMIKRLKDQY.FAELSELFNKVCVK...LQHVDSIIPPQISSEQYDRMK..SFKIMLERILQM.MQIGKSSVQPAMRDK........VPRYEKQIIS.......ILN.........SQRKPVQPQIQQQF.QPP
  524-  638 (231.30/63.81)	GHAGAGDWQEEIYQMIKRLKDQY.FAELSELFNKMCVK...LQHVDSIIPPQISSEQYDKMK..SFKIMLERILQM.LQIGKSSVQPSMMDN........VPRYEKQIIS.......ILN.........SQRKPVQPQIHQQF.QPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.51|      17|      25|     168|     184|       2
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  149-  165 (24.93/ 6.53)	QNTMNNDLAQGTSQDGY
  168-  184 (31.58/10.43)	QRQMAGRQQQQQSQQLI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23937 with Med15 domain of Kingdom Viridiplantae
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