<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23936

Description Uncharacterized protein
SequenceVVTLHLHRSPRDHMDPNWRPTQGCGPAAAAPAAAADPPPAGGDWRAQLQPEARGRIVDKIMDTLKNHLPVSVSLAPEALSELKKIAARFEEKVYTEATSQYDYLRKISVKLLSMETQRQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQIQQQFQPPPGHAGAGDWQEEIYQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDKMKSFKIMLERILQMLQIGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQFQPPAG
Length688
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.815
Instability index63.72
Isoelectric point9.42
Molecular weight78237.72
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23936
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     854.97|     115|     115|     456|     570|       1
---------------------------------------------------------------------------
   38-  162 (120.23/34.84)	P...................................................pAGGDWraqlQPEargriVDKIMDTLKNHL.PVSvslapeaLSEL.KK.IAARFE..EKVYTEATS..QYDYLRkiSVK.LLSMETQRQQaAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQ.QQAR.QP
  163-  297 (93.00/25.16)	NastsvqassltnirqnlpgvnqtstmqtasvipqntmnndlaqgtsqdGYA.A........Q........RQMAGRQQQQQ.SQQ.......L..IYHQhQQPSLQSQQPNIPLQ...QQQQQLM..GQQPNLQQN.QL...IGQQN.GAVMMQQQQRLAVQSNNLLNVQQ..............
  299-  367 (106.33/29.90)	.......................................................................HQM...LNQQY.I...........PLYQP......QQLGS..QANMSS..................LQQHQ...QNQQQQQLFGTVPNVSS.MQWMHMQQRKAQQPQQQHAQ.QP
  368-  436 (100.09/27.68)	P.........................................................................MGLMQPQFqHNQ.......LQ.........QLQH...LMP.QFQSQPNQ..........LQEQLRMQQ...QSSMQQRLQTSG........AMLLQQNNMDQ...QNQFiQA
  437-  569 (214.19/68.21)	P..............................rglqevssstsadstaqtGHA.SAGDW....QEE.....IHQMIKRLKDQY.FAE.......LSELFNK.VCVKLQHVDSIIPPQISSEQYDRMK..SFKIMLERILQMMQ.IGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQIQQQF.QP
  570-  685 (221.13/70.68)	P...............................................pGHA.GAGDW....QEE.....IYQMIKRLKDQY.FAE.......LSELFNK.MCVKLQHVDSIIPPQISSEQYDKMK..SFKIMLERILQMLQ.IGKSSVQPSMMDNVPRYEKQIISILNSQRKPVQPQIHQQF.QP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23936 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NNMDQQNQFIQAPRGLQEVSSSTSADSTAQTGHASAGDWQEE
2) QQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLL
3) RQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDGYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQ
4) SSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQ
5) VVTLHLHRSPRDHMDPNWRPTQGCGPAAAAPAAAADPPPAGGDWRAQLQPEA
425
382
118
344
1
466
422
273
380
52










Molecular Recognition Features






MoRF SequenceStartStop




NANANA