<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23927

Description Uncharacterized protein
SequenceMQLSVSTLKATEIGRAVNGLRKHSSQQIRHLALALIQDWKILVDEWVSTTNVALADNSPGTSNPSVVDDDEEEEGLPSPPLDEGAFFAPETTAIQLSEFFDEMDEDGNLRHNNDVRLGNKRENNGRRPANHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPHGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
Length322
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-1.069
Instability index56.53
Isoelectric point9.87
Molecular weight36365.42
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23927
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     153.58|      35|      35|     137|     171|       1
---------------------------------------------------------------------------
   77-  134 (24.83/ 7.51)	......PSPPLDEGAFFAPETTaiqlseffdemdedgnlrhnndvrlgnkRENN...GRRPANHSTV
  137-  171 (62.81/27.48)	PEL.TRPVGTVERDQFRRPELT............................RQEP...PMRHTNQQKP
  174-  209 (42.04/16.56)	SNLqAKPHGMLNKQS..RP.LS............................SDSGsmrPMKAATQQKP
  211-  235 (23.91/ 7.03)	........GEMKYKQTQEHFGV............................ERKP...AMGHVDK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.38|      14|      14|     244|     257|       2
---------------------------------------------------------------------------
  244-  257 (24.88/14.73)	SGVRLESARPKTQD
  261-  274 (23.50/13.57)	SNVRLEAAKRRLQE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23927 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSEFFDEMDEDGNLRHNNDVRLGNKRENNGRRPANHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPHGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
2) VALADNSPGTSNPSVVDDDEEEEGLPSPPLDEGAFFA
96
52
322
88










Molecular Recognition Features






MoRF SequenceStartStop




NANANA