<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23926

Description Uncharacterized protein
SequenceMADDGLDRWRGFFRGAGVGICEAIEKAILVAAADEPQEFLRRRDRIAERLFNALLARPSCHGCTASTGSVPPATPAVAEDKGSVRRVPEKDCKVDSSSLGAPGGGALGGGISEDDDSDSEDDERLRRAAASNYGHNYDDDNDVEEEQDAAAPAEEDHHAEDDDPEAEELEALTNEIDEESQIVGEVLRIKELLLHKQDHSDATLFDSLRRLQLMQLSVSTLKATEIGRAVNGLRKHSSQQIRHLALALIQDWKILVDEWVSTTNVALADNSPGTSNPSVVDDDEEEEGLPSPPLDEGAFFAPETTAIQLSEFFDEMDEDGNLRHNNDVRLGNKRENNGRRPANHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPHGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
Length535
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.925
Instability index63.82
Isoelectric point5.40
Molecular weight59485.18
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23926
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.07|      35|      40|     349|     386|       1
---------------------------------------------------------------------------
  290-  343 (31.48/ 8.82)	......PSPPLDEGAFFAPETTAiqlseffdemdEDG...NLRHNNDvrlgnkrenngRRPAN
  349-  386 (60.72/27.50)	KPEltrPVGTVERDQFRRPELTR...........QEP...PMRHTNQ...........QKPQG
  392-  424 (47.88/16.95)	KPH.....GMLNKQS..RP.LSS...........DSGsmrPMKAATQ...........QKPIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.62|      25|      39|      62|      86|       2
---------------------------------------------------------------------------
   21-   42 (30.55/13.39)	.CEAIEKAILVA..AADEPQEFLRR
   62-   86 (42.06/20.82)	GCTASTGSVPPATPAVAEDKGSVRR
  103-  127 (41.00/20.14)	GGGALGGGISEDDDSDSEDDERLRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.96|      14|      20|     450|     469|       3
---------------------------------------------------------------------------
  456-  469 (24.51/20.75)	SSGVRLESARPKTQ
  473-  486 (23.45/ 6.52)	ESNVRLEAAKRRLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.22|      18|      20|     128|     145|       4
---------------------------------------------------------------------------
  128-  145 (32.21/20.13)	AAASNYGHNYDDDNDVEE
  151-  168 (31.01/19.10)	APAEEDHHAEDDDPEAEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23926 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GCTASTGSVPPATPAVAEDKGSVRRVPEKDCKVDSSSLGAPGGGALGGGISEDDDSDSEDDERLRRAAASNYGHNYDDDNDVEEEQDAAAPAEEDHHAEDDDPEAEELEALTNEID
2) SEFFDEMDEDGNLRHNNDVRLGNKRENNGRRPANHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPHGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
3) VALADNSPGTSNPSVVDDDEEEEGLPSPPLDEGAFFA
62
310
265
177
535
301










Molecular Recognition Features






MoRF SequenceStartStop




NANANA