<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23925

Description Uncharacterized protein
SequenceMADDGLDRWRGFFRGAGVGICEAIEKAILVAAADEPQEFLRRRDRIAERLFNALLARPSCHGCTASTGSVPPATPAVAEDKGSVRRVPEKDCKVDSSSLGAPGGGALGGGISEDDDSDSEDDERLRRAAASNYGHNYDDDNDVEEEQDAAAPAEEDHHAEDDDPEAEELEALTNEIDEESQIVGEVLRIKELLLHKQDHSDATLFDSLRRLQLMQLSVSTLKATEIGRAVNGLRKHSSQQIRHLALALIQDWKILVDEWVSTTNVALADNSPGTSNPSVVDDDEEEEGLPSPPLDEGAFFAPETTAIQLSEFFDEMDEDGNLRHNNDVRLGNKRENNGRRPANHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPHGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEAAKRRLQERYQEAENGSCRLFVAIFSFITYMILWFI
Length515
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.792
Instability index63.64
Isoelectric point5.03
Molecular weight57224.66
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23925
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.37|      14|      15|     350|     363|       1
---------------------------------------------------------------------------
  350-  363 (22.27/12.28)	PELTRPVGTVERDQ
  367-  380 (21.76/11.83)	PELTRQEPPMRHTN
  417-  430 (19.33/ 9.71)	ATQQKPIGEMKYKQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.62|      25|      39|      62|      86|       2
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   21-   42 (30.55/12.56)	.CEAIEKAILVA..AADEPQEFLRR
   62-   86 (42.06/19.56)	GCTASTGSVPPATPAVAEDKGSVRR
  103-  127 (41.00/18.91)	GGGALGGGISEDDDSDSEDDERLRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.38|      14|      16|     457|     470|       3
---------------------------------------------------------------------------
  457-  470 (24.88/19.77)	SGVRLESARPKTQD
  474-  487 (23.50/18.22)	SNVRLEAAKRRLQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.00|      12|      41|     218|     237|       4
---------------------------------------------------------------------------
  201-  212 (18.95/ 9.78)	DATL........FDSLRRLQ
  218-  237 (13.05/22.71)	VSTLkateigraVNGLRKHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.48|      42|     139|     140|     182|       6
---------------------------------------------------------------------------
  140-  182 (65.15/41.51)	DNDVEEEQDAAAPAEEDHHAEdDDPEAEELEALTNEIDEESQI
  281-  322 (73.32/42.71)	DDDEEEEGLPSPPLDEGAFFA.PETTAIQLSEFFDEMDEDGNL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23925 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GCTASTGSVPPATPAVAEDKGSVRRVPEKDCKVDSSSLGAPGGGALGGGISEDDDSDSEDDERLRRAAASNYGHNYDDDNDVEEEQDAAAPAEEDHHAEDDDPEAEELEALTNEID
2) SEFFDEMDEDGNLRHNNDVRLGNKRENNGRRPANHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPHGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEAAKRRL
3) VALADNSPGTSNPSVVDDDEEEEGLPSPPLDEGAFFA
62
310
265
177
485
301










Molecular Recognition Features






MoRF SequenceStartStop




NANANA