<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23916

Description Uncharacterized protein
SequenceMRNARAILRASSMDTASPRSDGETAAAVAAEEEEEAVKIYVAVPEQHKDGRLTLAWALRNLAELAPAAAADVVVVVAHVHVPAQTIPVMGSKFHPSKLRADLVSVYRQNERKKMDNHLDEYTRQCSKMKIKCEKLVVESEDVVKGITELVSLHGASKLVVGAAADKHFSRYIYKMLVPRSKTALEVMHKAHPSCKIWFVCREHLISIREDRTLRSPIPTPAIVPARRSPIPASSIVSARRNRYASSNNAVDSLIQRSMSEKVSPLWLPCRSAIRRTLSILSMEHVSVGSWDSNPRDSVPSSCREEALSDSSSSFELPIDDVFTIHHNTAPCQDDQAKKTENVSKQKEDIAKVKEDIPLSKEEVEALKRERDNAIRKLSEVSEAKAELEQRVVDLEERTSLLDSQLRLAEETRTTGPGLDFAWCSEFSLSELRQATRNFSDATKVGDGVYRGVLRNTTVAIKMLHSHSSSQFQQEVVVVSRVRHPNLVTLMGCCPEASALVLEFLPNGSLEDRLARRDDTPPLAWQARTRIIGEVCSALVFLHSCEPRPVTHGDLNPDNILLDANLVSKIGDYGASRLPTMTNPGSSPYTDPELLITGELTADSDVYSFGVIVLRLVTGQPALGIARKVEEALEKGEMEALVDRSAGEWPFAQAEKLMLLGLQCAELSSRRRPARMSQVWRVVEPLAKAASMSVAPVSLVRESHMPSYFICPISQEVMRNPHTAADGYTYEAEAIKGWLDSGHETSPMTKMPLAHRHVTPSYALRSAIQNYMQQHQQKMPPRSVRST
Length786
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.327
Instability index53.76
Isoelectric point7.11
Molecular weight87180.52
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23916
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.51|      42|     400|     231|     272|       1
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  220-  263 (63.36/42.92)	PAIVPARRSpiPASSIVSARRNRYAS.SNNAVDSLI....QRSMSEKVS
  264-  312 (58.15/38.69)	PLWLPCRSAirRTLSILSMEHVSVGSwDSNPRDSVPsscrEEALSDSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.72|      25|     400|      73|      98|       2
---------------------------------------------------------------------------
   73-   98 (41.28/31.95)	VVVVAHVHVPaQTIPVMGSKFHPSKL
  475-  499 (45.44/30.49)	VVVVSRVRHP.NLVTLMGCCPEASAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.34|      44|     236|     423|     471|       3
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  423-  471 (61.82/58.51)	CSEfsLSELRQATRnFSDATKVGDGVYRGVlrNTTVA.IKML.HSHSSSQF
  663-  708 (68.52/45.61)	CAE..LSSRRRPAR.MSQVWRVVEPLAKAA..SMSVApVSLVrESHMPSYF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.63|      49|     161|     347|     405|       5
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  347-  405 (66.87/56.93)	ED.IAKVKEDIPLSKEevealKRerdnaIRKLSEVSEAKAEL...EQRVV...DLEERTSLLDSQL
  510-  565 (72.76/41.69)	EDrLARRDDTPPLAWQ.....AR.....TRIIGEVCSALVFLhscEPRPVthgDLNPDNILLDANL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23916 with Med32 domain of Kingdom Viridiplantae
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