<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23894

Description Uncharacterized protein
SequenceAAGGAQLASSPATVFRIRLKQPPASLKYKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSNLKTFEEKFLTQHPQNSAGWPNMLCVCSVFSSGSVQLHWSQWPPQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSITPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSELLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNPDSAMQKIQQLMNSKIEDSSSAISAVRSGLGAAKVEDGAATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGTSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPHLKIGGHINPHLSDMEEEGKTNFGIQSLWPRKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKV
Length1153
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.163
Instability index49.40
Isoelectric point6.83
Molecular weight124995.41
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23894
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     187.89|      46|     114|     821|     866|       1
---------------------------------------------------------------------------
  821-  866 (82.42/53.08)	GAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLI....GDCHFLHRLCQ
  884-  924 (37.81/20.11)	..ANAQKNPDSAMQK.IQQLMNSKIEDSSSAISAVrsglGAAKV......
  937-  978 (67.67/42.18)	GAKGLEENPM.GKSVRIG.SGNAGQGYTSDEVKVL......FLILVDLCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.24|      18|     115|      85|     106|       2
---------------------------------------------------------------------------
   85-  106 (31.14/25.53)	CSVFNvradSPRDFVQFIEWSP
  202-  219 (38.10/21.33)	CSVFS....SGSVQLHWSQWPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.48|      14|      32|     261|     277|       3
---------------------------------------------------------------------------
  261-  277 (22.77/14.96)	PLVNPSTvvvWEVMPGL
  295-  308 (28.71/12.42)	PSLNPPS...WSGFAPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.29|      16|     411|     278|     294|       9
---------------------------------------------------------------------------
  278-  294 (25.35/20.06)	GNGIQaTAKINATSPLP
  686-  701 (28.94/17.98)	GKGIE.SALINPSTLLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23894 with Med16 domain of Kingdom Viridiplantae
Unable to open file!