<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23888

Description Uncharacterized protein
SequenceLLSRDARPAPFASQNPRPHSTPMATPEVVASDGANPQHEPSRAEEAAPVAEPGEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPRPPRPQFAGSPAYMAPPASSPAPAFSYNVLPRAPPPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEVH
Length768
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.649
Instability index63.27
Isoelectric point6.35
Molecular weight80208.99
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23888
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     162.49|      27|      28|      90|     116|       1
---------------------------------------------------------------------------
   90-  116 (55.08/16.69)	AVLPPP.AS.PASAAAPG..PRPPRPQFAGS
  118-  147 (36.70/ 8.26)	AYMAPP.ASsPAPAFSYNvlPRAPPPQHMGS
  155-  181 (37.07/ 8.43)	ASAPAPmAR.PMPPAALQ..PPAPR.QYFGN
  284-  307 (33.62/ 6.84)	APSAPE.VS.PHTVQSL.....PPRPEGFGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     181.82|      27|      27|     347|     373|       2
---------------------------------------------------------------------------
  243-  270 (38.05/ 9.97)	MAP.NPPASI.rlPFPVPPRT..PNILYG.ANP
  311-  335 (33.45/ 7.81)	SAPGQRPSNLstpPSLLQRPT..G....P.A.P
  336-  363 (40.45/11.10)	SLPQTSPS..gaaPGAVPRAT..QQQFYP.SYP
  364-  392 (39.46/10.63)	SAPGNPPQPLwgyP...PQPTgfQQAPFH.SYP
  415-  438 (30.42/ 6.38)	NI..QPPGIT...TGD.PK.E..QPSVNPgSVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.85|      15|      15|     629|     643|       3
---------------------------------------------------------------------------
  629-  643 (24.95/11.40)	PSSSASELNGSKPAD
  646-  660 (22.12/ 9.28)	PKEQQGSKNGEKSKD
  671-  685 (22.77/ 9.77)	SSDSDDEEHGPSKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     199.85|      48|      49|     451|     499|       4
---------------------------------------------------------------------------
  443-  484 (76.07/54.71)	SVEQHPTG..............LEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGE
  485-  536 (67.79/52.80)	STYQRPPGYkGELEKvaaqpvpASWDKIAG...TD.WSIVTTSDGKKYYYDNKQKV
  537-  579 (55.99/37.96)	SSWQLPPEV.AELNK..nadsgNLKGSSTSLQDAGT.VANKGEA.........SGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.88|      19|     159|      42|      66|       8
---------------------------------------------------------------------------
   42-   60 (31.48/16.74)	RAEEAAPVAEPGEASDLGA
   71-   89 (32.41/ 7.70)	AAGDAPPATTPTSTSTSSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.98|      16|      16|     714|     729|       9
---------------------------------------------------------------------------
  714-  729 (28.69/18.54)	FDS..RFKAIPSHSTRRA
  731-  748 (23.29/13.70)	FDHfvRTRADEERKEKRA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23888 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTW
2) GAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREF
3) LLSRDARPAPFASQNPRPHSTPMATPEVVASDGANPQHEPSRAEEAAPVAEPGEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPRPPRPQFAGSPAYMAPPASSP
4) PAFSYNVLPRAPPPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQY
5) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIK
195
618
1
129
540
465
690
127
178
611










Molecular Recognition Features






MoRF SequenceStartStop




1) AAPAV
2) GKKYYYD
3) LIKKK
63
525
609
67
531
613