<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23887

Description Uncharacterized protein
SequenceMPMLACLLRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKVCEIGHYSLS
Length530
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.657
Instability index60.99
Isoelectric point6.11
Molecular weight55645.20
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23887
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.35|      26|      26|     132|     157|       1
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   38-   62 (39.50/10.70)	AP.F.PG.PMAPNPPASIRLP..FPVPPRT
  129-  155 (43.47/12.49)	QRpTGPA.PSLPQTSPSGAAP..GAVPRAT
  156-  182 (30.38/ 6.56)	QQqFYPSyPSAPGNPPQ...PlwGYPPQPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.74|      44|      49|     252|     300|       2
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  252-  300 (68.55/68.95)	LEDRSTAGvqdSDtWSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEK
  308-  351 (79.19/58.52)	ASWDKIAG...TD.WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.56|      21|      76|     357|     382|       4
---------------------------------------------------------------------------
  373-  417 (14.09/ 9.23)	NKGEASGEIStpaiqtggrdslPLRQTvapaSPSaldlikkkLQD
  450-  470 (33.47/13.99)	QQGSKNGEKS............KDNNG....NEN........MSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.86|      24|      26|      75|      99|       5
---------------------------------------------------------------------------
   75-   99 (36.46/18.60)	NlDVGASKSDAPSAPEVSPHTVQSL
  104-  127 (41.10/17.78)	E.GFGAVGGSAPGQRPSNLSTPPSL
  221-  241 (31.29/11.30)	....GITTGDPKEQPSVNPGSVQSI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23887 with Med35 domain of Kingdom Viridiplantae
Unable to open file!